Pairwise Alignments

Query, 761 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056

Subject, 928 a.a., CheA signal transduction histidine kinase from Synechococcus elongatus PCC 7942

 Score =  201 bits (512), Expect = 1e-55
 Identities = 118/339 (34%), Positives = 195/339 (57%), Gaps = 15/339 (4%)

Query: 430 LQSVVMQVRMVPLATVFQRYPRLIRDISRKLGKQVDLIIEGEDTEADKSIVEDLSEPLVH 489
           LQS + Q RMVP + +  + PR +R+ISR+ GK   L IEG+D   DK I++ L  P+ H
Sbjct: 440 LQSELNQTRMVPFSDLTDQLPRAVREISRRCGKGARLEIEGKDILIDKMILQKLQAPMTH 499

Query: 490 LIRNALDHGIESPDIRREQGKNPTGKITLSAFTLDDSVIIKMSDDGKGVDVERVKTKALE 549
           LI NAL HGIE+ +IR+ + K+  G + + A    +  +I ++DDG G+D E+VK KAL 
Sbjct: 500 LINNALSHGIETAEIRQYRNKSAEGTLVVRASLQGNRTLITVTDDGAGIDAEQVKLKALA 559

Query: 550 RGLVEASKLERMSQQEIIHLIFEPGFSTVEQVSDLSGRGVGMDAVRTAIERNGGTLTLSS 609
           RGL+   +   M  +EI  L+F PGFST +Q  +L+GRGVG+D VR A+    G + + S
Sbjct: 560 RGLITPEEAAGMRVREIYELLFRPGFSTRDQADELAGRGVGLDVVRRALHEIQGEIVVDS 619

Query: 610 EPGKGSEITMILPLSMTISRVMMFELEQQSFAIPIESVIQTLKISRHK---DIRRVKNLD 666
           E GKG+  T  LPL+++I++ +    E+   A P++SV + L I + +   D +    LD
Sbjct: 620 ELGKGTTFTFRLPLTLSITKALTCLHERARLAFPMDSVEEMLDIPQQRLAMDPQGQLRLD 679

Query: 667 TFILRGETVPILYLKRAFEMN----SAQIY-----PDIQPILVVRVGDDVLGLAVDRLQE 717
              L   ++P+  L    + +     ++ Y       +  I+V+R  ++ L +  D+++ 
Sbjct: 680 WHNL---SLPVFPLSSLLDFHLPFGRSRYYNSLGDDGVVSIVVLRNDNEYLAVQTDQIEG 736

Query: 718 GQDVIIKPLEGALATFSIYRGAAIMGDGRVLLVLDTEEV 756
            ++++IK +EG +A      G  +  DG+V+ ++D  E+
Sbjct: 737 EREIVIKQIEGPIAKPLGILGITVRSDGQVMPIVDVLEL 775



 Score = 33.5 bits (75), Expect = 5e-05
 Identities = 83/400 (20%), Positives = 144/400 (36%), Gaps = 90/400 (22%)

Query: 2   NPIMQNFIIESRDLIESAARGLLALEANPDDKAIINELFREIHTVKGASGILDNIAPFTQ 61
           N +   F+ E+R+ ++   + +  +EA   D     +  R  H++KG + +L     F Q
Sbjct: 7   NVLRSLFLRETRENLQLLTQMIGQMEAGLPDAKTFADASRAAHSLKGGAALL-KFETFRQ 65

Query: 62  LAHRMEDLMQKVRDGHVALNGTMLDLMLGCCDQFLLWIEELEQHQELSAEAVSISKQMIA 121
           LA  +E  +  + +  +      L L        +   + +E   E  A        +I 
Sbjct: 66  LAAGLETCLSLLSEAELPDYEVSLPLFQRAAALLITATDRIEAGVEEQAVVPEEGNPLIE 125

Query: 122 QLAPLTQAAPTHTPTPAVAAQEETATLSISELTELLGRDCFNDVEALLEHPDALLLIYTP 181
           QL  L +        P     +++A    S L +LL +D            + +LL  TP
Sbjct: 126 QLQVLQEMLQAAVQVP----PDQSAV--TSTLEDLLTQDF-----------ETVLLPPTP 168

Query: 182 DKQCFFSGDDPLAWMRSVEKVSWRKVVLIPDSEPFDTYQAQMQFLLLTQSAKKDLEQQLA 241
           D +                                   Q   Q L        DLE+  +
Sbjct: 169 DLE-----------------------------------QTLDQLL-------GDLEETPS 186

Query: 242 PIEGQYRLYRIQSDNLPTAPIDQRTQYVERIVKQQIALLREEQVSESVRAGTFLSIKNLY 301
           PI GQ       SD    A  D      + I          E+ SE+V       +K L 
Sbjct: 187 PIAGQ------GSDGDRPALEDLNFDLEDWIE-------ASEEESETVEIDIVAQVKALE 233

Query: 302 CALSQQISDRPAPLPESVSADELITLFDNILLSFAHRTAIIDKCENEPA----QPSAITV 357
            A++  ++  P   P S+       + D+IL      +A+I      P     +P A   
Sbjct: 234 AAIA-DLTQHPHEQPLSLG------IKDDIL------SAVIQAAPRLPVALTLEPVAKAR 280

Query: 358 NEQLDKVKKKQIKTLKVDQEKVDLLMDLVGELIVAKNSMQ 397
            +   K      +TL+V   ++D L +LVGE++V++N+++
Sbjct: 281 TQDNGKTPVVFEQTLRVPVRQLDNLSNLVGEIVVSRNTLE 320