Pairwise Alignments

Query, 761 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056

Subject, 952 a.a., CheA signal transduction histidine kinase from Synechococcus elongatus PCC 7942

 Score =  236 bits (601), Expect = 5e-66
 Identities = 132/376 (35%), Positives = 229/376 (60%), Gaps = 18/376 (4%)

Query: 390 IVAKNSMQYLAYRAENEFGVRKLAQDIKAEQSVISRLAEDLQSVVMQVRMVPLATVFQRY 449
           +V+++ M+ +    E    +    ++ +  +  + R A+ +Q  + QVRM P A +  RY
Sbjct: 428 LVSQDVMETIVQIQEITSDIETNLEETEQTEQSLRRTAKQMQGRLTQVRMRPFADLVNRY 487

Query: 450 PRLIRDISRKLGKQVDLIIEGEDTEADKSIVEDLSEPLVHLIRNALDHGIESPDIRREQG 509
           PR+IR + ++ GK V LII GE+T  D++I+E L++PL+HL+RNA DHG+ESP +R+ + 
Sbjct: 488 PRMIRQLGQEYGKDVRLIINGENTLVDRAILELLADPLLHLVRNAFDHGVESPQLRQSRD 547

Query: 510 KNPTGKITLSAFTLDDSVIIKMSDDGKGVDVERVKTKALERGLVEASKLERMSQQEIIHL 569
           K+PT  I +SA    +  +I + DDG GVD+++++ +A   GL + S LE  S +E++ L
Sbjct: 548 KSPTATIEVSAAYRGNQTVITIRDDGCGVDLQKIRQRAQRMGL-DQSSLEAASDRELLDL 606

Query: 570 IFEPGFSTVEQVSDLSGRGVGMDAVRTAIERNGGTLTLSSEPGKGSEITMILPLSMTISR 629
           IFEPGF+T EQV++LSGRGVGMD VRT +++  G + + ++P +G+  T+ +P S++++R
Sbjct: 607 IFEPGFTTAEQVTELSGRGVGMDVVRTNLQQIRGDIQIETKPNQGTTFTITVPFSLSVAR 666

Query: 630 VMMFELEQQSFAIPIESVIQTLKIS----RHKDIRRVKNLDTFILRGETVPILYLKRAFE 685
           V++ E+     AIP + + + ++++     +   + V NLD  +     VP+L L + F+
Sbjct: 667 VLLIEVSNILVAIPTDVIEEIIELNPSWILNSAGQTVLNLDEIL-----VPLLQLDQWFQ 721

Query: 686 MN------SAQIYPDI-QP-ILVVRVGDDVLGLAVDRLQEGQDVIIKPLEGALATFSIYR 737
            +      S    P I QP +L+V  G+  +G+ VDR    Q+V I+ +   +     + 
Sbjct: 722 FSRPCPPISLDGVPTINQPTVLLVNQGNSFVGIQVDRYWGEQEVTIRQVNSTIPLPPGFS 781

Query: 738 GAAIMGDGRVLLVLDT 753
              I+GDGR++ ++DT
Sbjct: 782 SCTILGDGRIVPLVDT 797



 Score = 38.5 bits (88), Expect = 2e-06
 Identities = 38/176 (21%), Positives = 76/176 (43%), Gaps = 15/176 (8%)

Query: 4   IMQNFIIESRDLIESAARGLLALEANPDDKAIINELFREIHTVKGASGILDNIAPFTQLA 63
           I   F+ E+ + + +  + L+ L    D ++ ++ + R  H++KG + ++      ++LA
Sbjct: 8   IRLQFLEEAEEYLGTIEKELVDLSQASDRRSQVDLILRAAHSIKGGAAMM-GFNTLSELA 66

Query: 64  HRMEDLMQKVRDGHVALNGTMLDLMLGCCDQFLLWIEELEQHQELSAEAVSISKQMI-AQ 122
           H++ED  + +R      +G   D  L    Q L  ++ L Q  +++ +    S Q + +Q
Sbjct: 67  HQLEDFFKVMR------SGKNFDQSLE--RQLLQGVDRLHQVLQVNRQGTDPSPQWLESQ 118

Query: 123 LAPL-----TQAAPTHTPTPAVAAQEETATLSISELTELLGRDCFNDVEALLEHPD 173
           + PL      Q              EE      S L E     C   +E++L+ P+
Sbjct: 119 VQPLFAVLREQFGDPQPDADLAMLSEEAGDDMRSLLFESEVEGCLQRLESVLQTPE 174