Pairwise Alignments

Query, 761 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056

Subject, 695 a.a., putative CheA signal transduction histidine kinase (RefSeq) from Shewanella amazonensis SB2B

 Score =  292 bits (747), Expect = 5e-83
 Identities = 218/770 (28%), Positives = 368/770 (47%), Gaps = 99/770 (12%)

Query: 1   MNPIMQNFIIESRDLIESAARGLLALEANPDDKAIINELFREIHTVKGASGILDNIAPFT 60
           ++   Q F  ES + +      LL L+    D   IN +FR  H++KG S        F 
Sbjct: 5   LSQFSQVFFEESIEGLAIMESELLKLDVAAPDPETINTIFRAAHSIKGGSATFG----FM 60

Query: 61  QLA---HRMEDLMQKVRDGHVALNGTMLDLMLGCCDQFLLWIEELEQHQELSAEAVSISK 117
           Q+A   H +E L+ ++RDG   +    +D++       LL ++ L    E        + 
Sbjct: 61  QVANYTHLLETLLDEIRDGRRQMQPDHVDML-------LLSVDLLRGMFEALMSQAEFND 113

Query: 118 QMIAQLAPLTQAAPTHTPTPAVAAQEETATLSISELTELLGRDCFNDVEALLEHPDALLL 177
             + +L         + P+   +     AT++             +D + L    D    
Sbjct: 114 PKLPELELRLNNTLANQPSQTQSISPPQATMA-------------SDSKTLCWQID---- 156

Query: 178 IYTPDKQCFFSGDDPLAWMRSVEKVSWRKVVLIPDSEP-FDTYQAQMQFL-----LLTQS 231
            +         G+DP+     +         L+P S P +D +  +  +L     L+T  
Sbjct: 157 -FKAGADIMRCGNDPMLMFAELASKGTLTAELLPVSFPAWDDFDPEACYLHWRLRLITDE 215

Query: 232 AKKDLEQQLAPIEGQYRLYRIQSDNLPTAPIDQRTQYVERIVKQQIALLREEQVSESVRA 291
             + L++    +E +  +   Q+   P+A  D  T+ +                      
Sbjct: 216 PLEKLKEVFEWVEDECEISYQQTAAAPSA--DTSTEML---------------------- 251

Query: 292 GTFLSIKNLYCALSQQISDRPAPLPESVSADELITLFDNILLSFAHRTAIIDKCENEPAQ 351
                                +P P+S   D  +   D I L+   +    DK      Q
Sbjct: 252 ---------------------SPSPQS-EVDPPVAAPDVIALTPQVQALATDKAVASQKQ 289

Query: 352 PSAITVNEQLDKVKKKQIKTLKVDQEKVDLLMDLVGELIVAKNSMQYLAYRAE-NEFGVR 410
            +A          K  +  +++V  EK+D+L+++VGEL++ +  +  +  + E N+  + 
Sbjct: 290 SAAAA--------KSGESSSIRVSTEKIDMLINMVGELVITQAMLGQIGQQDEINQESLL 341

Query: 411 KLAQDIKAEQSVISRLAEDLQSVVMQVRMVPLATVFQRYPRLIRDISRKLGKQVDLIIEG 470
            L Q ++     ++    DLQ  VMQ+RM+P++  F R+PRL+RDI ++LGK+V+LI++G
Sbjct: 342 LLQQGLEQ----LASHTRDLQESVMQIRMLPISFAFNRFPRLVRDIGQQLGKKVELILKG 397

Query: 471 EDTEADKSIVEDLSEPLVHLIRNALDHGIESPDIRREQGKNPTGKITLSAFTLDDSVIIK 530
           EDTE DK+++E + +P+VHL+RN+LDHG+ESP+ R  QGK+ TG I L+A+     +II+
Sbjct: 398 EDTELDKTVLEKIVDPMVHLVRNSLDHGLESPEARLAQGKSETGTIMLNAYHQGGCIIIE 457

Query: 531 MSDDGKGVDVERVKTKALERGLVEASKLERMSQQEIIHLIFEPGFSTVEQVSDLSGRGVG 590
           ++DDG G++  ++  KA ++GLV A   E +S++ I  LIF PGFST + VSDLSGRGVG
Sbjct: 458 IADDGAGLNTHKILEKARQKGLVGAE--EELSEEAIHQLIFRPGFSTADAVSDLSGRGVG 515

Query: 591 MDAVRTAIERNGGTLTLSSEPGKGSEITMILPLSMTISRVMMFELEQQSFAIPIESVIQT 650
           MD V+  I    G++ L SE GKGS  T+ LPL++ I    +  + +  + +P+ S+ ++
Sbjct: 516 MDVVKRNIHELNGSIELKSEAGKGSRFTIRLPLTLAILDGQLIRIGKHIYVVPLVSIYES 575

Query: 651 LKISRHKDIRRVKNLDTFILRGETVPILYLKRAFEMNSAQIYPDIQPILVVRVGDDVLGL 710
           L++  ++  R     +   LR E +P++ + R F  ++         ++VV   ++  GL
Sbjct: 576 LQVPTNRINRLSDGHELIRLRDEYLPVIKMYREFNHDADAREIKDGLVMVVDHNNEKAGL 635

Query: 711 AVDRLQEGQDVIIKPLEGALATFSIYRGAAIMGDGRVLLVLDTEEVVKHA 760
            VD L   Q V+IK LE          GA I+GDG V L++D   +VK A
Sbjct: 636 LVDELLAQQQVVIKSLEENYTRIPGISGATILGDGTVALIIDVAGLVKLA 685