Pairwise Alignments

Query, 761 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056

Subject, 759 a.a., putative CheA signal transduction histidine kinase (RefSeq) from Shewanella amazonensis SB2B

 Score =  324 bits (831), Expect = 9e-93
 Identities = 232/781 (29%), Positives = 392/781 (50%), Gaps = 60/781 (7%)

Query: 4   IMQNFIIESRDLIESAARGLLALEANPDDKAIINELFREIHTVKGASGILDNIAPFTQLA 63
           I+Q+F+IE+ +++E     L+ALE NP+D  ++N +FR  HTVKG +G L  +AP   + 
Sbjct: 9   ILQDFLIEAGEILELLQEQLVALENNPEDTDLLNAIFRGFHTVKGGAGFL-GLAPMVDVC 67

Query: 64  HRMEDLMQKVRDGHVALNGTMLDLMLGCCDQFLLWIEELEQHQELSAEAVSISKQMIAQL 123
           H  E+    +R G   +   ++D++L   D       + +  Q         S +++ +L
Sbjct: 68  HESENTFDLLRTGKRHVTAELMDIILQAVDAINTMFAQTQAGQAQEPA----SAELLDKL 123

Query: 124 APLTQAAPTHTPTPAVAAQEETATLSISELTELLGRDCFNDVEALLEHPDALLLIYTPDK 183
             L+  AP  +     A+   ++  +I+   E+ G + F D+E   E   A  +   P  
Sbjct: 124 KLLSSGAPLPSEG-GEASSSSSSEPTINVDNEIPGVELFGDLE---EPAAAEPVTQAPAM 179

Query: 184 QCFFSGDDPLAWMRSVEKVSWRKVVLIPDS----------------EPFDTYQAQMQFLL 227
              F  D P A   S+++++  +   + D+                 P     A      
Sbjct: 180 TDDFLFDSP-ASDSSIDEINEAEFEALLDALHGSGKGPGVTGTSGAAPSADKAAAKAAPA 238

Query: 228 LTQSAKKDLEQQLAPIEGQYRLYRIQSDNLPTAPIDQRTQYVE--RIVKQQIALLREEQV 285
             +    + E  L  + G  + ++  +D +     D    +V+   I   +   L +E  
Sbjct: 239 GDEITDDEFEALLDELHGSGK-FKATTDKVVAKVEDSPADHVDTDEITDDEFEKLLDELH 297

Query: 286 SESVRAGTFLSIKNLYCALSQQISDR-PAPLPESVSADELITLFDNILLSFAHRTAIIDK 344
            +    G   + K    A SQ  S   PA  P+ V+           +++     A + K
Sbjct: 298 GKGTGPGVVSAAKPAAPATSQPKSAAAPAESPKPVAKPSSPVEAPKPVVAAEKSPAPVAK 357

Query: 345 CENEPAQPSAITVNEQLDKVKKKQIKTLKVDQEKVDLLMDLVGELIVAKNSMQYLAYRAE 404
               PA  +++   E           T++VD  ++D +M++VGEL++ +N +  L    E
Sbjct: 358 AA--PAAGASVPQGET----------TVRVDTARLDQIMNMVGELVLVRNRLVSLGVTRE 405

Query: 405 NEFGVRKLAQDIKAEQSVISRLAEDLQSVVMQVRMVPLATVFQRYPRLIRDISRKLGKQV 464
           +E   + LA         +  +  DLQ  VM+ RM P+  VF R+PR++RD++R L K++
Sbjct: 406 DEEMSKALAN--------LDLVTADLQGAVMKTRMQPIKKVFGRFPRVVRDLARSLNKEI 457

Query: 465 DLIIEGEDTEADKSIVEDLSEPLVHLIRNALDHGIESPDIRREQGKNPTGKITLSAFTLD 524
           DL++ GE+T+ DK++VE L++PLVHL+RN++DHGIE P  R   GK  TG ITLSA    
Sbjct: 458 DLVLVGEETDLDKNLVEALADPLVHLVRNSVDHGIEMPADRVASGKPKTGTITLSASQEG 517

Query: 525 DSVIIKMSDDGKGVDVERVKTKALERGLVEASKLERMSQQEIIHLIFEPGFSTVEQVSDL 584
           D +++K+ DDG G+D E++K  A++RG+++     RMS  E  +LIF PGFST  ++SD+
Sbjct: 518 DHILLKIEDDGAGMDPEKLKAIAVKRGVLDEDAAARMSDHEAYNLIFAPGFSTKTEISDI 577

Query: 585 SGRGVGMDAVRTAIERNGGTLTLSSEPGKGSEITMILPLSMTISRVMMFELEQQSFAIPI 644
           SGRGVGMD V+T I +  GT+ + S  GKG+ + + +PL++ I   +M E+ +Q FA+P+
Sbjct: 578 SGRGVGMDVVKTRITQLNGTVHIDSVKGKGTILEIKVPLTLAIMPTLMVEVAKQVFALPL 637

Query: 645 ESVIQTLKISRHKDIRRVKNLD---TFILRGETVPILYLKRAFEMNSAQIYPDIQP---I 698
            SV +      H D+ +   +D   T I R + VP+ YL++    +  +     +    +
Sbjct: 638 SSVNEIF----HLDLTKTNIVDGQLTVIFRDKAVPLFYLEQWLSRSKTKFKHGDKKHGHV 693

Query: 699 LVVRVGDDVLGLAVDRLQEGQDVIIKPLEGALATFSIYRGAAIMGDGRVLLVLDTEEVVK 758
           ++V++G   +G  VD L   ++V+IKPL   L       GA I  DG + L+LD   ++K
Sbjct: 694 VIVQLGTMQIGFVVDALIGQEEVVIKPLGALLHGTPGMAGATITSDGGIALILDVPGLLK 753

Query: 759 H 759
           H
Sbjct: 754 H 754