Pairwise Alignments

Query, 761 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056

Subject, 746 a.a., CheA signal transduction histidine kinase (RefSeq) from Shewanella loihica PV-4

 Score =  318 bits (814), Expect = 9e-91
 Identities = 231/777 (29%), Positives = 388/777 (49%), Gaps = 66/777 (8%)

Query: 4   IMQNFIIESRDLIESAARGLLALEANPDDKAIINELFREIHTVKGASGILDNIAPFTQLA 63
           I+Q+F+IE+ +++E  +  L+ALE NPDD  ++N +FR  HTVKG +G L ++ P   + 
Sbjct: 9   ILQDFLIEAGEILELLSEQLVALENNPDDTELLNAIFRGFHTVKGGAGFL-SLTPMVDVC 67

Query: 64  HRMEDLMQKVRDGHVALNGTMLDLMLGCCDQFLLWIEELEQHQELSAEAVSISKQMIAQL 123
           H  E+    +R G  +++  ++D++L   D     I  +    +   E     + ++A L
Sbjct: 68  HEAENTFDLLRTGKRSVSAELMDIILQAVDT----INSMFAETQAGVEQSPADEGLLANL 123

Query: 124 APLTQAA--PTHTPTPAVAAQEETATLSISELTELLGRDCFNDVEALLEHPDALLLIYTP 181
             L+     P+     +V A  ET      E+    G + F+     +   D + L   P
Sbjct: 124 KLLSSGGLLPSEQGGASVEAVAETPAEPAVEIPADDGIELFD-----MPLDDGVELFDEP 178

Query: 182 DKQC---FFSGDDPLAWMRSVEKVSWRKVVLIPDSEPFDTYQAQMQFLLLTQS---AKKD 235
                    +G+  +  +   E  +    +      P  T  A +  +  + S      +
Sbjct: 179 VSDAPVTSIAGEGDIDEIDESEFEALLDALHGSGKGPSSTAPAGVAPIQASDSDDITDDE 238

Query: 236 LEQQLAPIEGQYRLYRIQSDNLPTAPIDQRTQ---YVERIVKQQIALLREEQVSESVRAG 292
            E  L  + G     + Q+ + P A + + T      + I   +   L +E        G
Sbjct: 239 FESLLDELHGS---GKFQAPSAPIAKVPEPTSPPVDADEITDDEFEKLLDELHGAGAGPG 295

Query: 293 TFLSIKNLYCALSQQISDRP----APLPESVSADELITLFDNILLSFAHRTAIIDKCENE 348
           +  S K +  A     +  P     P P SV +  +       ++    + A      N 
Sbjct: 296 SETS-KPVASAAKAPAAPAPNKVATPAPSSVKSQPVEVPAPKPVVK--EKAAAKAPATNM 352

Query: 349 PAQPSAITVNEQLDKVKKKQIKTLKVDQEKVDLLMDLVGELIVAKNSMQYLAYRAENEFG 408
           P   + + V+            T ++DQ     +M++VGEL++ +N +  L        G
Sbjct: 353 PQAETTVRVD------------TARLDQ-----IMNMVGELVLVRNRLLSL--------G 387

Query: 409 VRKLAQDIKAEQSVISRLAEDLQSVVMQVRMVPLATVFQRYPRLIRDISRKLGKQVDLII 468
           + +  +D+    + +  +  DLQ  VM+ RM P+  VF R+PR++RD++R L K++DL +
Sbjct: 388 ISRDDEDMSKALANLDLVTADLQGAVMKTRMQPIKKVFGRFPRVVRDLARSLNKEIDLRM 447

Query: 469 EGEDTEADKSIVEDLSEPLVHLIRNALDHGIESPDIRREQGKNPTGKITLSAFTLDDSVI 528
            GEDT+ DK++VE L++PLVHL+RN++DHGIE PD R   GK+ TG ITLSA    D ++
Sbjct: 448 IGEDTDLDKNLVEALADPLVHLVRNSVDHGIEMPDEREANGKSRTGTITLSASQEGDHIL 507

Query: 529 IKMSDDGKGVDVERVKTKALERGLVEASKLERMSQQEIIHLIFEPGFSTVEQVSDLSGRG 588
           +K+ DDG G+D E++K  A++RG+++     RMS +E  +LIF PGFST  ++SD+SGRG
Sbjct: 508 LKIEDDGAGMDPEKLKQIAIKRGVLDEDAAARMSDEEAYNLIFAPGFSTKVEISDISGRG 567

Query: 589 VGMDAVRTAIERNGGTLTLSSEPGKGSEITMILPLSMTISRVMMFELEQQSFAIPIESVI 648
           VGMD V+T I +  GT+ + S  GKG+ + + +PL++ I   +M E+ QQ FA+P+ SV 
Sbjct: 568 VGMDVVKTRITQLNGTVHIDSLKGKGTCLEIKVPLTLAIMPTLMVEVAQQVFALPLSSVS 627

Query: 649 QTLKISRHKDIRRVKNLD---TFILRGETVPILYLKRAFEMNSAQI-YPDIQ--PILVVR 702
           +      H D+ +   +D   T I+R + VP+ YL+      +    + D Q   +++V+
Sbjct: 628 EIF----HLDLTKTNVVDGQLTVIVREKAVPLFYLEHWLSRKAVSFKHGDKQHGHVVIVQ 683

Query: 703 VGDDVLGLAVDRLQEGQDVIIKPLEGALATFSIYRGAAIMGDGRVLLVLDTEEVVKH 759
           +G   +G  VD L   ++V+IKPL   L       GA I  DG + L+LD   ++KH
Sbjct: 684 LGTMQIGFVVDSLIGQEEVVIKPLGTLLHGTPGMAGATITSDGGIALILDVPGLLKH 740