Pairwise Alignments

Query, 761 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056

Subject, 686 a.a., CheA signal transduction histidine kinase (RefSeq) from Shewanella loihica PV-4

 Score =  302 bits (774), Expect = 3e-86
 Identities = 222/764 (29%), Positives = 371/764 (48%), Gaps = 96/764 (12%)

Query: 1   MNPIMQNFIIESRDLIESAARGLLALEANPDDKAIINELFREIHTVKGASGIL--DNIAP 58
           ++   Q F  ES + +ES    LL L+    D   IN +FR  H++KG SG    + +A 
Sbjct: 5   LSQFSQVFFEESLEGLESMESELLKLDIAAPDPEAINTIFRAAHSIKGGSGTFGFNQVAN 64

Query: 59  FTQLAHRMEDLMQKVRDGHVALNGTMLDLMLGCCDQFLLWIEELEQHQELSAEAVSISKQ 118
           +T   H +E L+ ++RDG   +     D++L   D     ++ +   Q      +S  +Q
Sbjct: 65  YT---HLLETLLDEIRDGRREMTSHHQDILLLSVDLLRNMLDAVMHQQTFDDPMLSDLEQ 121

Query: 119 MIAQLAPLTQAAPTHTPTPAVAAQEETATLSISELTELLGRDCFNDVEALLEHPDALLLI 178
             A  A L+Q       T       E  T  IS          F     +L +       
Sbjct: 122 KFA--AELSQGESQEDETQREPETPEQTTWQIS----------FKAGTDILRY------- 162

Query: 179 YTPDKQCFFSGDDPLAWMRSVEKVSWRKVVLIPDSEPFDTYQAQMQFLLLTQSAKKDLEQ 238
                     G+DPL     + +     V L+P   P D  Q   +   L  S     +Q
Sbjct: 163 ----------GNDPLLMFNELGQCGELSVELLPQEIP-DFTQYDPEACYLAWSLTLTTDQ 211

Query: 239 QLAPIEGQYRLYRIQSDNLPTAPIDQRTQYVERIVKQQIALLREEQVSESVRAGTFLSIK 298
            L+ ++  +     + D +      + ++  E   +++I    E  +  S +  T  S++
Sbjct: 212 PLSRLKEAFEWVEDECD-IDYQAQPKASEASEITTEKEIEATAESDIQASTQTTTPASVQ 270

Query: 299 NLYCALSQQISDRPAPLPESVSADELITLFDNILLSFAHRTAIIDKCENEPAQPSAITVN 358
                      ++PA                                     +PS ++  
Sbjct: 271 ----------PEKPA----------------------------------SQTRPSVVSS- 285

Query: 359 EQLDKVKKKQIKTLKVDQEKVDLLMDLVGELIVAKNSMQYLAYRAENEFGVRKLAQDIKA 418
                 K +   +++V  EK+DLL+++VGEL++ +  +  +  + E      +    +K 
Sbjct: 286 ------KTQDAGSIRVSIEKIDLLINMVGELVITQAMLGQIGQQEEM---TPESFITMKQ 336

Query: 419 EQSVISRLAEDLQSVVMQVRMVPLATVFQRYPRLIRDISRKLGKQVDLIIEGEDTEADKS 478
               ++    DLQ  VMQ+RM+P++  F R+PRL+RDI ++LGK+V+LI++GEDTE DK+
Sbjct: 337 GLEQLASHTRDLQESVMQIRMLPISFAFNRFPRLVRDIGQQLGKKVELILKGEDTELDKT 396

Query: 479 IVEDLSEPLVHLIRNALDHGIESPDIRREQGKNPTGKITLSAFTLDDSVIIKMSDDGKGV 538
           ++E + +P+VHL+RN+LDHG+E+P++RR++GK  TG +TL+AF    ++II++ DDG G+
Sbjct: 397 VMEKIVDPMVHLVRNSLDHGLETPEVRRQKGKPETGTLTLNAFHQGGNIIIEIIDDGAGL 456

Query: 539 DVERVKTKALERGLVEASKLERMSQQEIIHLIFEPGFSTVEQVSDLSGRGVGMDAVRTAI 598
           + +++  KA  +GLV +   E +S++ I  LIF+PGFST E VSDLSGRGVGMD V   I
Sbjct: 457 NTQKILDKARAKGLVGSD--EELSEEAIHQLIFKPGFSTAETVSDLSGRGVGMDVVLRNI 514

Query: 599 ERNGGTLTLSSEPGKGSEITMILPLSMTISRVMMFELEQQSFAIPIESVIQTLKISRHKD 658
               GT+ L S   KGS  T+ LPL++ I    +  +   ++ +P+ ++ ++L++     
Sbjct: 515 HELNGTIELKSTQDKGSRFTIRLPLTLAILDGQLVRIGTHTYVVPLVAIHESLEVPAAHI 574

Query: 659 IRRVKNLDTFILRGETVPILYLKRAF--EMNSAQIYPDIQPILVVRVGDDVLGLAVDRLQ 716
            R  +  +   LR E +P+L +  AF  E ++ QI   +  ++VV   +D +GL VD L 
Sbjct: 575 NRLSEEHEVIRLRDEYLPVLKVYEAFHHEADAKQIKDGL--VMVVDANNDKVGLLVDELL 632

Query: 717 EGQDVIIKPLEGALATFSIYRGAAIMGDGRVLLVLDTEEVVKHA 760
             Q V+IK LE   +  +   GA I+GDG V L++D   +V  A
Sbjct: 633 SQQQVVIKSLEDNYSKVAGISGATILGDGTVALIIDIAGLVSLA 676