Pairwise Alignments

Query, 761 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056

Subject, 1030 a.a., CheA signal transduction histidine kinase (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  336 bits (861), Expect = 4e-96
 Identities = 175/392 (44%), Positives = 261/392 (66%), Gaps = 4/392 (1%)

Query: 367  KQIKTLKVDQEKVDLLMDLVGELIVAKNSMQYLAYRAENEFGV--RKLAQDIKAEQSVIS 424
            K   T++VD EK+D LM+L+GELI+ +N    LA R E++  V   ++AQD+      ++
Sbjct: 632  KASSTIRVDHEKLDHLMNLIGELIINRNRYTMLARRLEDDTNVVIAEVAQDLSETTYAMA 691

Query: 425  RLAEDLQSVVMQVRMVPLATVFQRYPRLIRDISRKLGKQVDLIIEGEDTEADKSIVEDLS 484
            R+++DLQ  +M+VRMVP+++VF R+PRL+RD+SRK GK+VDLI+EGE+TE DKS+VE + 
Sbjct: 692  RISDDLQDTIMKVRMVPVSSVFSRFPRLVRDLSRKSGKEVDLILEGEETELDKSVVEVIG 751

Query: 485  EPLVHLIRNALDHGIESPDIRREQGKNPTGKITLSAFTLDDSVIIKMSDDGKGVDVERVK 544
            +PLVHLIRNA+DHG+ES D R  +GK   GK+TL A+   +SV I++ DDGKG+D E+++
Sbjct: 752  DPLVHLIRNAVDHGVESEDERVAKGKKAKGKVTLRAYHKGNSVAIEIEDDGKGIDPEKMR 811

Query: 545  TKALERGLVEASKLERMSQQEIIHLIFEPGFSTVEQVSDLSGRGVGMDAVRTAIERNGGT 604
              A+ +G++   + + M  +E + LIF PGFS+ E+++D+SGRGVGMD VRT I+   G+
Sbjct: 812  EVAVRKGIITPDEAKAMDDREAMELIFAPGFSSAEKITDISGRGVGMDVVRTNIKNLKGS 871

Query: 605  LTLSSEPGKGSEITMILPLSMTISRVMMFELEQQSFAIPIESVIQTLKISRHKDIRRVKN 664
            +++ SE GKG+  T+ LPL++ I   +M  +  + +AIP+++V +T KI   + +  VK 
Sbjct: 872  VSIHSEIGKGTRFTLSLPLTLAIIDALMVNVAGEMYAIPLDAVSETTKIEARR-LTDVKG 930

Query: 665  LDTFILRGETVPILYLKRAFEMNSAQIYPDIQPILVVRVGDDVLGLAVDRLQEGQDVIIK 724
                 LRGE + I  L     +       D+  ++V+   D  LGL VDRL E Q+++IK
Sbjct: 931  RKAVTLRGEVLGIASLSELLGLPKGD-KQDVLSVVVIHDNDRRLGLVVDRLLERQEIVIK 989

Query: 725  PLEGALATFSIYRGAAIMGDGRVLLVLDTEEV 756
            PL   L       GA IMGDG V+L+LD  EV
Sbjct: 990  PLGAYLGDLKGISGATIMGDGSVILILDPHEV 1021



 Score = 78.6 bits (192), Expect = 2e-18
 Identities = 48/143 (33%), Positives = 82/143 (57%), Gaps = 6/143 (4%)

Query: 1   MNP-IMQNFIIESRDLIESAARGLLALEANPDDKAIINELFREIHTVKGASGILDNIAPF 59
           M+P I  +FI+E+++ +E+    LL LE  PD+ A++NE+FR +H++KGASG L  +   
Sbjct: 6   MDPEIFADFIVEAKEHLETIEPNLLELEKAPDNLALLNEIFRPMHSLKGASGFL-GLNRI 64

Query: 60  TQLAHRMEDLMQKVRDGHVALNGTMLDLMLGCCDQFLLWIEELEQHQELSAEAVSISKQM 119
             LAHR E++M ++R G + +   ++D++L   D     ++ L+       E    ++ +
Sbjct: 65  NGLAHRAENIMDELRKGDMTVTSEIMDVILSATDALRQMVDNLD---TTGGEGDVETESI 121

Query: 120 IAQL-APLTQAAPTHTPTPAVAA 141
           IA + A +   AP   P PA AA
Sbjct: 122 IATIDAIMAGGAPPAAPRPAPAA 144



 Score = 63.2 bits (152), Expect = 7e-14
 Identities = 33/86 (38%), Positives = 54/86 (62%), Gaps = 2/86 (2%)

Query: 5   MQNFIIESRDLIESAARGLLALEANPDDKA-IINELFREIHTVKGASGILDNIAPFTQLA 63
           +++FI E+R++ E+ + GLL LE NP ++  ++N+LFR  H +KG SGI+   A    L 
Sbjct: 219 LKDFIDEAREMAENLSSGLLELERNPTEQGELVNDLFRFFHNLKGNSGII-GFAELNSLT 277

Query: 64  HRMEDLMQKVRDGHVALNGTMLDLML 89
           H  E L+  VR G +  +  ++DL+L
Sbjct: 278 HEAETLLNNVRRGEMTGSHELVDLLL 303



 Score = 30.0 bits (66), Expect = 6e-04
 Identities = 35/151 (23%), Positives = 62/151 (41%), Gaps = 15/151 (9%)

Query: 8   FIIESRDLIESAARGLLALEANPDDKAIINELFREIHTVKGASGI--LDNIAPFTQLAHR 65
           FI   R  +++    L  L  +   +  ++ L+R + T++ +SG   LD+I  +   A R
Sbjct: 395 FINTVRQQMDNVGVALKTLAVDGTQREYVDALYRCLVTIQNSSGYMGLDDIRVY---AER 451

Query: 66  MEDLMQKVRDGHVALNGTMLDLMLGCCDQFLLWIEELEQHQELSAEAVSISKQMIAQLAP 125
              L+ + R      +G    LM+   +Q    I ++     L  +   IS    AQ   
Sbjct: 452 TAGLVDQAR-----FSGMDFSLMVDLMEQETSIIGDM-----LEKQIARISMPAPAQAPE 501

Query: 126 LTQAAPTHTPTPAVAAQEETATLSISELTEL 156
              AAP     PA AA+ +      +  T++
Sbjct: 502 AAPAAPEAKAAPAPAAEAKAVAAPPAAKTDV 532