Pairwise Alignments
Query, 761 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056
Subject, 2530 a.a., CheA signal transduction histidine kinase from Marinobacter adhaerens HP15
Score = 220 bits (560), Expect = 8e-61
Identities = 116/342 (33%), Positives = 208/342 (60%), Gaps = 12/342 (3%)
Query: 424 SRLAEDLQSVVMQVRMVPLATVFQRYPRLIRDISRKLGKQVDLIIEGEDTEADKSIVEDL 483
SR+ +LQ +M+ RM+P A++ R R++R IS +LGK+VD + + E D+SI+E +
Sbjct: 2047 SRINTELQEGLMKTRMIPFASMVPRLRRIVRQISGELGKKVDFDVRNAEGEMDRSILERM 2106
Query: 484 SEPLVHLIRNALDHGIESPDIRREQGKNPTGKITLSAFTLDDSVIIKMSDDGKGVDVERV 543
PL H++RNALDHGIESP R++ GK TG++TLS V+++M DDG G+ +
Sbjct: 2107 IAPLEHMLRNALDHGIESPADRKQAGKPETGEVTLSLTREGGDVVLRMIDDGAGIPSSVI 2166
Query: 544 KTKALERGLVEASKLERMSQQEIIHLIFEPGFSTVEQVSDLSGRGVGMDAVRTAIERNGG 603
+ KA+ +G++ E +S++EI+ I +PGFST +QV+ +SGRGVGMD V + I++ GG
Sbjct: 2167 RDKAIRQGMLRED--EDLSEREILQFILQPGFSTAQQVTQISGRGVGMDVVASEIKQLGG 2224
Query: 604 TLTLSSEPGKGSEITMILPLSMTISRVMMFELEQQSFAIPIESVIQTLKISRHKDIRRVK 663
+L + S G+G+ T+ LP +++++R +M + +AIP+ ++ +++S ++ K
Sbjct: 2225 SLDIDSAVGRGTTFTVRLPFTVSVNRALMVSTGEDFYAIPLNTIEGIVRVSTYELEEYYK 2284
Query: 664 -NLDTFILRGETVPILYLKRAFEMNSAQIYPDIQ------PILVVRVGDDVLGLAVDRLQ 716
+ + G+ + YL + ++ +P +Q P+++VR + + L VD L
Sbjct: 2285 PDAPMYEYAGQEYRLQYLG---SLLNSDHHPKLQGQALPLPVILVRGAEQPMALQVDNLM 2341
Query: 717 EGQDVIIKPLEGALATFSIYRGAAIMGDGRVLLVLDTEEVVK 758
+++++K L ++ GA I+GDG V+++LD +++
Sbjct: 2342 GSREIVVKSLGPQFSSVRGVSGATILGDGNVVVILDLPAMIR 2383
Score = 65.1 bits (157), Expect = 5e-14
Identities = 107/501 (21%), Positives = 204/501 (40%), Gaps = 73/501 (14%)
Query: 8 FIIESRDLIESAARGLLALEANPDDKAIINELFREIHTVKGASGILDNIAPFTQLAHRME 67
F+ E+RDLI+S A L + N + I+ L R++HT+KG + + D I L+H +E
Sbjct: 1278 FLEEARDLIDSTAEALQSWSENTGNLDILRLLQRDLHTLKGGARLAD-IPAVGDLSHELE 1336
Query: 68 DLMQKVRDGHVALNGTMLDLMLGCCDQFLLWIEELEQHQELSAEAVSISKQMIAQLAPLT 127
+L + + + +++N + DL+ C D+ +E LE + E + +I ++
Sbjct: 1337 NLFEGLTEQRLSINDELSDLLFRCHDRLAGMVENLE-----AKEPPRPAPDLIGEIQAYM 1391
Query: 128 QAAPTHTPTPAVAAQEETATLSISELTELLGRDCFNDVE-ALLEHPDALLLIYTPDKQCF 186
+A P VA+ EE A FND E A L D + D +
Sbjct: 1392 DSATGTRPVTNVASPEEEA------------EPDFNDEEQAPLPEVDEPV---DSDSETA 1436
Query: 187 FSG--DDPLAWMRSVEKVSWRKVVLIPDSEPFDTYQAQMQFLLL------TQSAKKDLEQ 238
+G +D +A + ++ ++V I E +D + L +S +L++
Sbjct: 1437 ETGEAEDGVADLSHLDP----ELVGIFLEEAYDLINSTGSALHTWTEDPSDRSIAAELQR 1492
Query: 239 QLAPIEGQYRLYRIQSDNLPTAPIDQRTQYVERIVKQQIALLREEQVSESVRAGTFLSIK 298
+ ++G R+ +++ T ++ E++ + Q+ + S+++ F
Sbjct: 1493 DVHTLKGGARMAGVEAIGDLTHVLE---DLFEKVAEGQL------EASDAMNDLLFACHD 1543
Query: 299 NLYCALSQQISDRPAPLPESVSADELITLFDNILLSFAHRTAIIDKCENEPAQPSAITV- 357
L + Q + +P P A+EL+ +IL +A D E EP QP+ +
Sbjct: 1544 RLAQMVEQVATQKPCP-----PAEELVARVQSILRG---ESAPSDDREQEPEQPAGAEIA 1595
Query: 358 ----NEQLDKVKKKQIKTLKVDQEKVDLLMDLVGELIVA-KNSMQYLAYRAENEFGVRKL 412
E D + T D + + + +D E+ A + E G+ +L
Sbjct: 1596 EAPTEESADAPDLSETLTQASDDDLIGIFLDEGLEIYGAISECLDQWREEPEELTGLTQL 1655
Query: 413 AQDIK--------AEQSVISRLAEDLQSVVMQVRMVPLATVFQRYPRLIRDISRKLGK-- 462
Q++ ++ I+ LAE + PL + L++ R LG
Sbjct: 1656 QQELHTLKGGARLSDVDPIANLAEAWSDA-----LDPLISGSNNQKTLLKLSDRALGSLK 1710
Query: 463 -QVDLIIEGEDTEADKSIVED 482
++ + +G E D ++ED
Sbjct: 1711 TMLNSLEQGSKPEPDADLIED 1731
Score = 43.9 bits (102), Expect = 1e-07
Identities = 25/112 (22%), Positives = 59/112 (52%), Gaps = 1/112 (0%)
Query: 4 IMQNFIIESRDLIESAARGLLALEANPDDKAIINELFREIHTVKGASGILDNIAPFTQLA 63
I++ F+ E+ +++++ L L DD++ ++E+ R HT+KG SG + +LA
Sbjct: 790 ILEIFVEEAGEVLDTIREYLPMLLRQHDDRSALSEVRRAFHTLKG-SGRMVGALVVGELA 848
Query: 64 HRMEDLMQKVRDGHVALNGTMLDLMLGCCDQFLLWIEELEQHQELSAEAVSI 115
+E+++ +V DG + +N + L+ +++ E+ + S + ++
Sbjct: 849 WSVENMLNRVIDGSIFMNDDIASLLEDVTASLPALVDDFEKRRAASFDTANL 900
Score = 38.5 bits (88), Expect = 5e-06
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 4 IMQNFIIESRDLIESAARGLLALEANPDDKAIINELFREIHTVKGASGILDNIAPFTQLA 63
I+ F+ E+ +++E+ L N DD+ + E+ R HT+KG SG L +LA
Sbjct: 613 ILGIFVEEAEEVLETIHEFYPRLRQNHDDREALTEVRRAFHTLKG-SGRLVGATSIGELA 671
Query: 64 HRMEDLMQKVRDGHVALNGTMLDLM 88
+E+L+ +V D + M L+
Sbjct: 672 WSVENLLNRVIDQTIRPTEDMFTLV 696
Score = 34.3 bits (77), Expect = 9e-05
Identities = 33/176 (18%), Positives = 70/176 (39%), Gaps = 14/176 (7%)
Query: 1 MNPIMQNFIIESRDLIESAARGLLALEANPDDKAIINELFREIHTVKGASGILDNIAPFT 60
++P++ + + + L+ + ++L R +HT+KG++ IAP
Sbjct: 949 VDPVLLDIFESETETHLQTLKDFLSAAGDKTTVTYTDDLSRALHTLKGSAHTA-GIAPIA 1007
Query: 61 QLAHRMEDLMQKVRDGHVALNGTMLDLMLGCCDQFLLWIEELEQHQELSAEAVSISKQMI 120
+ +E +++ R + N +L L+ CD + ++ ++ + S + +
Sbjct: 1008 AVITPLERFVKESRAQNKRANRDVLSLIESACDFLTQGLAQIRENPQASLPGTEAFLEKL 1067
Query: 121 AQLAPLT-----QAAPTHTPTPAVAAQEETATLSISELTELLGRDCFNDVEALLEH 171
QL T + AP P A L ++E G D D + +L+H
Sbjct: 1068 DQLTEETLRGHSEEAPRQHPQ---QAPSRLVQLFLNE-----GLDIVLDADQILDH 1115
Score = 32.3 bits (72), Expect = 3e-04
Identities = 31/136 (22%), Positives = 57/136 (41%), Gaps = 7/136 (5%)
Query: 11 ESRDLIESAARGLLALEANPDDKAIINELFREIHTVKGASGI--LDNIAPFTQLAHRMED 68
ESR+ +E ++ A+ D I + +H+++G + LD +A A R
Sbjct: 450 ESRNTLEQVKSAIVNFIASQWDTREIEHVPGLLHSIRGGLSLIPLDRVASMLASAERY-- 507
Query: 69 LMQKVRDGHVALNGTMLDLMLGCCDQFLLWIEELEQHQELSAEAVSISKQMIAQLAPLTQ 128
+ + DG + LD++ ++E L + + + +++ +A L
Sbjct: 508 ISDVLLDGKQVPDWKQLDILADAVTSIEYYLERLAEGIGENDSILRVAEDSLASLGFPVG 567
Query: 129 AAPTHTPTPAVAAQEE 144
A PT T T AQEE
Sbjct: 568 AEPTWTET---TAQEE 580