Pairwise Alignments

Query, 761 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056

Subject, 758 a.a., chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  278 bits (712), Expect = 6e-79
 Identities = 150/395 (37%), Positives = 242/395 (61%), Gaps = 18/395 (4%)

Query: 371 TLKVDQEKVDLLMDLVGELIVAKNSMQYLAYRAENEFGVRKLAQDIKAEQSVISRLAEDL 430
           T++VD  ++D +M++VGEL++ +N +  L    ++E   + LA         +  +  DL
Sbjct: 370 TVRVDTARLDQIMNMVGELVLVRNRLVSLGISRDDEEMSKALAN--------LDLVTADL 421

Query: 431 QSVVMQVRMVPLATVFQRYPRLIRDISRKLGKQVDLIIEGEDTEADKSIVEDLSEPLVHL 490
           Q  VM+ RM P+  VF R+PR++RD++R L K++DL++ GE+T+ DK++VE L++PLVHL
Sbjct: 422 QGAVMKTRMQPIKKVFGRFPRVVRDLARTLNKEIDLVLVGEETDLDKNLVEALADPLVHL 481

Query: 491 IRNALDHGIESPDIRREQGKNPTGKITLSAFTLDDSVIIKMSDDGKGVDVERVKTKALER 550
           +RN++DHGIE P+ R   GK  TG ITLSA    D +++K+ DDG G+D E++K  A++R
Sbjct: 482 VRNSVDHGIEMPNDREASGKPRTGVITLSASQEGDHILLKIEDDGAGMDPEKLKQIAIKR 541

Query: 551 GLVEASKLERMSQQEIIHLIFEPGFSTVEQVSDLSGRGVGMDAVRTAIERNGGTLTLSSE 610
           G+++     RM+  E  +LIF PGFST  ++SD+SGRGVGMD V+T I +  GT+ + S 
Sbjct: 542 GVLDEDSAARMTDNEAYNLIFAPGFSTKVEISDISGRGVGMDVVKTRITQLNGTVHIDSM 601

Query: 611 PGKGSEITMILPLSMTISRVMMFELEQQSFAIPIESVIQTLKISRHKDIRRVKNLD---T 667
            GKG+ + + +PL++ I   +M ++ +Q FA+P+ SV +      H D+ +   +D   T
Sbjct: 602 KGKGTILEIKVPLTLAIMPTLMVDVAKQVFALPLSSVNEIF----HLDLTKTNIVDGQLT 657

Query: 668 FILRGETVPILYLKRAFEMNSAQIYPDIQP---ILVVRVGDDVLGLAVDRLQEGQDVIIK 724
            I+R + VP+ YL+     N        +    +++V++G   +G  VD L   ++V+IK
Sbjct: 658 VIVRNKAVPLFYLEHWLHRNKTNFKHGDKKHGHVVIVQLGIMQIGFVVDALIGQEEVVIK 717

Query: 725 PLEGALATFSIYRGAAIMGDGRVLLVLDTEEVVKH 759
           PL   L       GA I  DG + L+LD   ++KH
Sbjct: 718 PLGALLHGTPGMAGATITSDGGIALILDVPGLLKH 752



 Score = 77.4 bits (189), Expect = 3e-18
 Identities = 44/152 (28%), Positives = 81/152 (53%), Gaps = 3/152 (1%)

Query: 4   IMQNFIIESRDLIESAARGLLALEANPDDKAIINELFREIHTVKGASGILDNIAPFTQLA 63
           I+Q+F+IE+ +++E     L+ALE NPDD  ++N +FR  HTVKG +G L ++ P   + 
Sbjct: 9   ILQDFLIEAGEILELLQEQLVALENNPDDTDLLNAIFRGFHTVKGGAGFL-SLTPMVDVC 67

Query: 64  HRMEDLMQKVRDGHVALNGTMLDLMLGCCDQFLLWIEELEQ-HQELSAEAVSISK-QMIA 121
           H  E+    +R G  ++   ++D++L   D       + +Q  Q+  A+A  ++K ++++
Sbjct: 68  HEAENTFDLLRTGKRSVTAELMDIILQAVDAINTMFAQTQQGEQQDPADAALLAKLKLLS 127

Query: 122 QLAPLTQAAPTHTPTPAVAAQEETATLSISEL 153
              PL        P P +  + E    +I E+
Sbjct: 128 SGEPLPSELGQRAPEPELIPEPEPVIETIVEV 159