Pairwise Alignments

Query, 761 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056

Subject, 702 a.a., chemotaxis protein CheA (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  248 bits (632), Expect = 1e-69
 Identities = 139/394 (35%), Positives = 227/394 (57%), Gaps = 9/394 (2%)

Query: 368 QIKTLKVDQEKVDLLMDLVGELIVAKNSMQYLAYRAENEFGVRKLAQDIKAEQSVISRLA 427
           Q  TL+V+  K+D L++L GEL++ ++ +  +      E G R     +K     + R  
Sbjct: 317 QDATLRVETSKIDTLVNLAGELVITQSMLTLIGNEISGELGER-----LKTALVELERNT 371

Query: 428 EDLQSVVMQVRMVPLATVFQRYPRLIRDISRKLGKQVDLIIEGEDTEADKSIVEDLSEPL 487
            ++Q  VM VRM+P++ VF R+ RL+RD+S +LGK V+L+IEG +TE DK ++E L +PL
Sbjct: 372 REMQEAVMSVRMLPVSFVFNRFHRLVRDLSDQLGKNVNLVIEGGNTEIDKGMIEKLVDPL 431

Query: 488 VHLIRNALDHGIESPDIRREQGKNPTGKITLSAFTLDDSVIIKMSDDGKGVDVERVKTKA 547
            HL+RN+LDHGIE P++RR  GK    +++L A     +++I + DDG G+  E++  KA
Sbjct: 432 THLVRNSLDHGIEKPEVRRLLGKAEIAQLSLRASQRGGNIVIAVHDDGAGLHREKILQKA 491

Query: 548 LERGLVEASKLERMSQQEIIHLIFEPGFSTVEQVSDLSGRGVGMDAVRTAIERNGGTLTL 607
            E  +   S  + M  ++I  LIF  GFST ++++D+SGRGVGMD VR  IE  GG + +
Sbjct: 492 RENNM---SVTDNMPDKQIWQLIFAAGFSTAKEITDVSGRGVGMDVVRRNIEALGGRIDI 548

Query: 608 SSEPGKGSEITMILPLSMTISRVMMFELEQQSFAIPIESVIQTLKISRHKDIRRVKNLDT 667
            S  G+G+   + LPL++ I   M   + +Q + +P+  +I++++    + ++ +     
Sbjct: 549 DSVAGQGATFEIQLPLTLAIVDGMSVSVGKQIYILPLVHIIESIQ-PHTEQLKYLAQERL 607

Query: 668 FILRGETVPILYLKRAFEMNSAQIYPDIQPILVVRVGDDVLGLAVDRLQEGQDVIIKPLE 727
             +R E +P+L L +  E+      P+   ++++   +   GL VD L   Q V+IK LE
Sbjct: 608 IRVREEYLPLLNLHQLMEITPFAKCPEEGIVVLLESNNKRFGLCVDALVGQQQVVIKSLE 667

Query: 728 GALATFSIYRGAAIMGDGRVLLVLDTEEVVKHAR 761
                     GA IMGDG V L+LD E + +  +
Sbjct: 668 KHYRRIPGVSGATIMGDGSVALILDVESLAQQIK 701



 Score = 60.1 bits (144), Expect = 4e-13
 Identities = 42/147 (28%), Positives = 71/147 (48%), Gaps = 5/147 (3%)

Query: 6   QNFIIESRDLIESAARGLLALEANPDDKAIINELFREIHTVKGASGILDNIAPFTQLAHR 65
           Q F  ES + +E+  + L+A+     D   +N +FR  H++KG SGI       + + H 
Sbjct: 10  QVFFEESHEHLENMEQLLIAINLQSPDPEELNTIFRAAHSIKGGSGIF-GFTALSSVTHV 68

Query: 66  MEDLMQKVRDGHVALNGTMLDLMLGCCDQFLLWIEELEQHQELSAEAVSISK-QMIAQL- 123
           ME+L+ KVR G   L+  ++DL+L   D     +    + + +  + V  +K Q++A L 
Sbjct: 69  MENLLDKVRKGTFELSSGIIDLLLKTVDTLSHILSLYREEEPIDWQQVEFAKNQLVAALN 128

Query: 124 -APLTQAAPTHTP-TPAVAAQEETATL 148
             P    +P   P TP      +TA +
Sbjct: 129 GDPFLTTSPEAIPATPTKTEITQTAVV 155