Pairwise Alignments

Query, 761 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056

Subject, 704 a.a., CheA signal transduction histidine kinases (RefSeq) from Shewanella sp. ANA-3

 Score =  254 bits (648), Expect = 1e-71
 Identities = 148/420 (35%), Positives = 236/420 (56%), Gaps = 14/420 (3%)

Query: 347 NEPAQPSAITVNEQLDKVKKK-----QIKTLKVDQEKVDLLMDLVGELIVAKNSMQYLAY 401
           + PA  +         +V KK     Q  TL+V+  K+D L++L GEL++ ++ +  +  
Sbjct: 293 SSPAMNTTSATPAASSQVAKKASTSTQDATLRVETSKIDTLVNLAGELVITQSMLTLIGN 352

Query: 402 RAENEFGVRKLAQDIKAEQSVISRLAEDLQSVVMQVRMVPLATVFQRYPRLIRDISRKLG 461
               E G R     +K   + + R   ++Q  VM VRM+P++ VF R+ RL+RD+S +LG
Sbjct: 353 ELGGELGER-----LKTALNELERNTREMQEAVMSVRMLPVSFVFNRFHRLVRDLSEQLG 407

Query: 462 KQVDLIIEGEDTEADKSIVEDLSEPLVHLIRNALDHGIESPDIRREQGKNPTGKITLSAF 521
           K V L+IEG +TE DK ++E L +PL HL+RN+LDHGIE P+ R   GK+  G ++L A 
Sbjct: 408 KNVTLVIEGGNTEIDKGMIEKLVDPLTHLVRNSLDHGIEKPEKRVAAGKSEVGVLSLKAS 467

Query: 522 TLDDSVIIKMSDDGKGVDVERVKTKALERGLVEASKLERMSQQEIIHLIFEPGFSTVEQV 581
               S++I + DDG G++ ER+  KA E G+   +  E M+ +++  LIF  GFST  +V
Sbjct: 468 QRGGSIVIAVHDDGGGLNRERILQKARENGM---ALPENMTDKQVWQLIFAAGFSTAAEV 524

Query: 582 SDLSGRGVGMDAVRTAIERNGGTLTLSSEPGKGSEITMILPLSMTISRVMMFELEQQSFA 641
           +D+SGRGVGMD VR  IE  GG + + S  G+G+   + LPL++ I   M   +  Q + 
Sbjct: 525 TDVSGRGVGMDVVRKNIEALGGRIDIDSVAGEGATFEIQLPLTLAIVDGMSVSVGNQIYI 584

Query: 642 IPIESVIQTLKISRHKDIRRVKNLDTFILRGETVPILYLKRAFEMNSAQIYPDIQPILVV 701
           +P+  +I++++  + + ++ +       +R E +P+L L +  E+      P+   ++++
Sbjct: 585 LPLVHIIESIQ-PQTEQLKFLAKERLLRVREEYLPLLNLYQLMEIEPQAKTPEAGIVVLL 643

Query: 702 RVGDDVLGLAVDRLQEGQDVIIKPLEGALATFSIYRGAAIMGDGRVLLVLDTEEVVKHAR 761
              +   GL VD L   Q V+IK LE          GA IMGDG V L+LD E +  H +
Sbjct: 644 ESNNKRFGLCVDALVGQQQVVIKSLEKHYRRIPGVSGATIMGDGSVALILDVESLALHIK 703



 Score = 62.4 bits (150), Expect = 8e-14
 Identities = 44/153 (28%), Positives = 72/153 (47%), Gaps = 7/153 (4%)

Query: 6   QNFIIESRDLIESAARGLLALEANPDDKAIINELFREIHTVKGASGILDNIAPFTQLAHR 65
           Q F  ES + +E+  + LLAL+    D   +N +FR  H++KG SGI       T + H 
Sbjct: 10  QVFFEESHEHLENMEQLLLALDLAAPDPEELNTIFRAAHSIKGGSGIF-GFTALTSVTHV 68

Query: 66  MEDLMQKVRDGHVALNGTMLDLMLGCCDQFLLWIEELEQHQELSAEAVSISKQMIAQLAP 125
           ME+L+ K R G   L+ +++DL+L   D     +    + + +  + V  +K    QL  
Sbjct: 69  MENLLDKTRKGTFELSSSVIDLLLRTVDTLSHILNLYREEEPIDWQQVEFAKN---QLVA 125

Query: 126 LTQAAPTHTPTPAV---AAQEETATLSISELTE 155
                P  T    V   A QE+ A +S +  ++
Sbjct: 126 ALNGEPFSTQAAKVVETANQEKPAAVSTNSASQ 158