Pairwise Alignments

Query, 761 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056

Subject, 762 a.a., CheA signal transduction histidine kinases (RefSeq) from Shewanella sp. ANA-3

 Score =  321 bits (822), Expect = 1e-91
 Identities = 233/789 (29%), Positives = 389/789 (49%), Gaps = 74/789 (9%)

Query: 4   IMQNFIIESRDLIESAARGLLALEANPDDKAIINELFREIHTVKGASGILDNIAPFTQLA 63
           I+Q+F+IE+ +++E     L+ALE NPDD  ++N +FR  HTVKG +G L ++ P   + 
Sbjct: 9   ILQDFLIEAGEILELLQEQLVALENNPDDTNLLNAIFRGFHTVKGGAGFL-SLTPMVDVC 67

Query: 64  HRMEDLMQKVRDGHVALNGTMLDLMLGCCDQFLLWIEELEQ-HQELSAEAVSISK----- 117
           H  E+    +R G  +++  ++D++L   D       + +Q  Q+  A+   ++K     
Sbjct: 68  HEAENTFDLLRTGKRSVSAELMDIILQAVDAINTMFAQTQQGEQQDPADPALLAKLKMLS 127

Query: 118 ----------QMIAQLAPLTQAAPTHTPTPA----VAAQE-------ETATLSISELTEL 156
                     Q  A++ PL +  P   P       VAA E       E +  SI E+ E 
Sbjct: 128 SGEPLPSESGQSSAEVEPLPEPEPEPEPVIETVFEVAAVEDMPIEKSELSDSSIDEIDEA 187

Query: 157 LGRDCFNDVEALLEHPDALLLIYTPDKQCFFSGDDPLAWMRSVEKVSWRKVVLIPDSEPF 216
                  + EALL+       ++   K    S     A   +V+           D    
Sbjct: 188 -------EFEALLD------ALHGAGKGPGVSAPQADA-APAVQNKPQATSASASDDITD 233

Query: 217 DTYQAQMQFLLLTQSAKKDLEQQLAPIEGQYRLYRIQSDNLPTAPIDQRTQYVERIVKQQ 276
           D ++A +  L  +   K  +E+   P     +   + +   P AP     +  E      
Sbjct: 234 DEFEALLDELHGSGKFKGKVEEPAKP-----KAEAVAAAPKPAAPAVDSDEITED----- 283

Query: 277 IALLREEQVSESVRAGTFLSIKNLYCALSQQISDRPAPLPESVSADELITLFDNILLSFA 336
                 E++ + +        K    A S      PA  P S +A          + + A
Sbjct: 284 ----EFERLLDELHGKGGAPAKVTAKAESAPAKTEPAKAPPSAAAPSTPAAPKASVATPA 339

Query: 337 HRTAIIDKCENEPAQPSAITVNEQLDKVKKKQIKTLKVDQEKVDLLMDLVGELIVAKNSM 396
              A+  K +   A+ +             +   T++VD  ++D +M++VGEL++ +N +
Sbjct: 340 TPPAVKAKTDVAVAEKAPAKAAAAASANVPQGETTVRVDTARLDQIMNMVGELVLVRNRL 399

Query: 397 QYLAYRAENEFGVRKLAQDIKAEQSVISRLAEDLQSVVMQVRMVPLATVFQRYPRLIRDI 456
             L    ++E   + LA         +  +  DLQ  VM+ RM P+  VF R+PR++RD+
Sbjct: 400 LSLGISRDDEEMSKALAN--------LDLVTADLQGAVMKTRMQPIKKVFGRFPRVVRDL 451

Query: 457 SRKLGKQVDLIIEGEDTEADKSIVEDLSEPLVHLIRNALDHGIESPDIRREQGKNPTGKI 516
           +R L K++DL++ GE+T+ DK++VE L++PLVHL+RN++DHGIE P+ R   GK  TG I
Sbjct: 452 ARTLNKEIDLVLVGEETDLDKNLVEALADPLVHLVRNSVDHGIEMPNDREASGKPRTGTI 511

Query: 517 TLSAFTLDDSVIIKMSDDGKGVDVERVKTKALERGLVEASKLERMSQQEIIHLIFEPGFS 576
           TLSA    D +++K+ DDG G+D E++K  A++RG+++     RM+  E  +LIF PGFS
Sbjct: 512 TLSASQEGDHILLKIEDDGAGMDPEKLKQIAIKRGVLDEDTAARMTDSEAYNLIFAPGFS 571

Query: 577 TVEQVSDLSGRGVGMDAVRTAIERNGGTLTLSSEPGKGSEITMILPLSMTISRVMMFELE 636
           T  ++SD+SGRGVGMD V+T I +  GT+ + S  GKG+ + + +PL++ I   +M ++ 
Sbjct: 572 TKVEISDISGRGVGMDVVKTRITQLNGTVHIDSMKGKGTVLEIKVPLTLAIMPTLMVDVA 631

Query: 637 QQSFAIPIESVIQTLKISRHKDIRRVKNLD---TFILRGETVPILYLKRAFEMNSAQIYP 693
           +Q FA+P+ SV +      H D+ +   +D   T I+R + VP+ YL++    N      
Sbjct: 632 KQVFALPLSSVNEIF----HLDLTKTNIVDGQLTVIVRNKAVPLFYLEQWLHRNRTNFKH 687

Query: 694 DIQP---ILVVRVGDDVLGLAVDRLQEGQDVIIKPLEGALATFSIYRGAAIMGDGRVLLV 750
             +    +++V++G   +G  VD L   ++V+IKPL   L       GA I  DG + L+
Sbjct: 688 GDKKHGHVVIVQLGMMQIGFVVDALIGQEEVVIKPLGALLHGTPGMAGATITSDGGIALI 747

Query: 751 LDTEEVVKH 759
           LD   ++KH
Sbjct: 748 LDVPGLLKH 756