Pairwise Alignments

Query, 411 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 647 a.a., Methyl-accepting chemotaxis protein from Pseudomonas fluorescens FW300-N2E2

 Score = 99.0 bits (245), Expect = 4e-25
 Identities = 81/287 (28%), Positives = 132/287 (45%), Gaps = 40/287 (13%)

Query: 44  YLPFAITALILTMTALV-FSQGNLFVR-------FLQQIHEQE-------TMKQKETVSA 88
           +L  AI A++  + ALV  S  ++ VR        LQ+I E E       T++ K+  + 
Sbjct: 294 WLIAAIAAVLAVVFALVGASFASVIVRPIRGVANGLQEIAEGEGDLTRKLTVQGKDETAT 353

Query: 89  ICDWIDEYRDLNGLVADHIENVNSDAQKATEDILNHICSLDHAAANFTHYLKDMEFDSQN 148
           +  W +++  +   +   I + +SD Q A  D  +   +++ AA      ++ +      
Sbjct: 354 LAGWFNQFLGMIAQLMQRIGSASSDLQTAAADTSHVAQNMNDAAGRQRQAVELVSTAFNE 413

Query: 149 MVSSLDEHTLVISNLADSTRSLMSNIQTERKQVNDVLNRVMGL----------------- 191
           MV++ +E     S  A S      ++   +  + +    VM L                 
Sbjct: 414 MVATANEVARSCSQAASSADEGYRDVHDGQHHIGEATGSVMKLSDDLQKSTQTMQALEQD 473

Query: 192 ----NEITEVISKIANETNLLALNAAIEAARSGEMGRGFAVVADEVRHLAQRAGEAASQI 247
               N I + I  IA +TNLLALNAAIEAAR+G+ GRGFAVVADEVR LA+R  ++    
Sbjct: 474 SKNINTILDTIRSIAEQTNLLALNAAIEAARAGDQGRGFAVVADEVRALARRTADSTG-- 531

Query: 248 SEEIESLRAEVTQRFEVANKESSEQNIKADMMIESVQSLRQSFSSVR 294
             EI+SL   + +R +   ++       +   +E +Q  R SF  +R
Sbjct: 532 --EIDSLLGNLARRTQEVTQQMQSSLQVSQTSVERIQQARDSFDKIR 576



 Score = 33.5 bits (75), Expect = 2e-05
 Identities = 25/128 (19%), Positives = 51/128 (39%), Gaps = 4/128 (3%)

Query: 218 RSGEMGRGFAVVADEVRHLAQRAGEAASQISEEIESLRAEVTQRFEVANKESSEQNIKAD 277
           R G         A +  H+AQ   +AA +  + +E +     +    AN+ +   +  A 
Sbjct: 371 RIGSASSDLQTAAADTSHVAQNMNDAAGRQRQAVELVSTAFNEMVATANEVARSCSQAAS 430

Query: 278 MMIESVQSLRQSFSSVRELSERQITQIMLYNNDLEKNISGSMACTQFQDIVRQKLDSIEA 337
              E  + +      + E +      +M  ++DL+K+     A  Q    +   LD+I +
Sbjct: 431 SADEGYRDVHDGQHHIGEATG----SVMKLSDDLQKSTQTMQALEQDSKNINTILDTIRS 486

Query: 338 LMREKHLL 345
           +  + +LL
Sbjct: 487 IAEQTNLL 494