Pairwise Alignments

Query, 411 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 662 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  100 bits (249), Expect = 1e-25
 Identities = 82/271 (30%), Positives = 131/271 (48%), Gaps = 41/271 (15%)

Query: 119 EDILNHICSLDHAAANFTHYLKDMEFDSQNMVSSLD----------EHTLVISNLADSTR 168
           ED+      +D  A+  T     ++  +QN V + +          E +L +   ADS  
Sbjct: 411 EDVALGHSEVDQVASAMTEMSATVQEIAQNAVQASEASAQANKEAKEGSLEVERTADSIN 470

Query: 169 SLMSNIQTERKQVNDVLNRVMGLNEITEVISKIANETNLLALNAAIEAARSGEMGRGFAV 228
            L   I    + +N++   + G+ ++  VIS IA +TNLLALNAAIEAAR+GEMGRGFAV
Sbjct: 471 ELAQEIADAAQAINNLDEDIKGIVDVLGVISGIAEQTNLLALNAAIEAARAGEMGRGFAV 530

Query: 229 VADEVRHLAQRAGEAASQISEEIESLRAEVTQRFEVANKESSEQNIKADMMIESVQSLRQ 288
           VADEVR LAQRA  +    +E+I S+   + +  ++A K       KA++ +  V+S R 
Sbjct: 531 VADEVRSLAQRAQTS----TEDIRSMTERLERGAKIAVKAMESGRNKAEISV--VESKRA 584

Query: 289 SFSSVRELSERQITQIMLYNNDLEKNISGSMACTQFQDIVRQKLDSIEALMREKHLLVGD 348
               +R +SE  +   M  N  +        A T  Q  V ++++               
Sbjct: 585 GEELIRIVSEVSVIDSM--NEQI-------AAATHEQSAVSEEVNQ-------------- 621

Query: 349 VFNGMRLNDLRHRELEYTETLRRLSLEYRHD 379
             N M+++D+     E ++ L +L+    +D
Sbjct: 622 --NAMKISDIYRNTHEVSDRLSQLNESLLND 650



 Score = 25.4 bits (54), Expect = 0.005
 Identities = 34/166 (20%), Positives = 65/166 (39%), Gaps = 35/166 (21%)

Query: 102 LVADHIENVNSDAQKATEDILNHICSLDHAAANFTHYLKDMEFDSQNMVSSLDEHTLVIS 161
           +VAD + ++   AQ +TEDI                         ++M   L+    +  
Sbjct: 530 VVADEVRSLAQRAQTSTEDI-------------------------RSMTERLERGAKIAV 564

Query: 162 NLADSTRSLMSNIQTERKQVNDVLNRVMGLNEITEVISKIANETNLLALNAAIEAARSGE 221
              +S R+       E K+  + L R      I   +S I +    +A     ++A S E
Sbjct: 565 KAMESGRNKAEISVVESKRAGEELIR------IVSEVSVIDSMNEQIAAATHEQSAVSEE 618

Query: 222 MGRGFAVVADEVRHLAQRAGEAASQISEEIESLRAEVTQRFEVANK 267
           + +    ++D  R+      E + ++S+  ESL  +V+   E+ +K
Sbjct: 619 VNQNAMKISDIYRN----THEVSDRLSQLNESLLNDVSAMSELVSK 660