Pairwise Alignments

Query, 411 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 527 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score = 95.5 bits (236), Expect = 3e-24
 Identities = 74/231 (32%), Positives = 115/231 (49%), Gaps = 31/231 (13%)

Query: 103 VADHIENVNSDAQKATEDILNHICSLDHAAANFTHYLKDMEFDSQNMVSSLDEHTLVISN 162
           V DH+ ++ SD  +A+E + + I  L+  +   TH L+    ++  +V+++ E +    N
Sbjct: 241 VIDHLRHMISDIAQASEHMSDQIGQLNVQSNANTHALQTHAVETDQVVTAMTEMSATAHN 300

Query: 163 LADSTRSL-----MSNIQTER--KQVNDVLNRVMGL--------------NE-------I 194
           +A    S       +N Q ++  K V    N V+ L              NE       I
Sbjct: 301 VAGDAASAARFTQQANEQADKSKKAVEQAANTVVALVGKVDTAAHTIAEMNENTRHIATI 360

Query: 195 TEVISKIANETNLLALNAAIEAARSGEMGRGFAVVADEVRHLAQRAGEAASQISEEIESL 254
            +VI  IA++TNLLALNAAIEAAR+GE GRGFAVVADEVR LA R   + ++I++ +E L
Sbjct: 361 LDVIGDIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAARTQASTAEINQMLERL 420

Query: 255 RAEVTQRFEVANKESSEQNIKAD---MMIESVQSLRQSFSSVRELSERQIT 302
           R          ++        AD   ++ ES+++L      +  LS +  T
Sbjct: 421 RTGANSAVNAMDETKQSCQDAADTTTLVTESLETLTTYVFDINGLSNQIAT 471



 Score = 27.3 bits (59), Expect = 0.001
 Identities = 24/115 (20%), Positives = 50/115 (43%), Gaps = 23/115 (20%)

Query: 131 AAANFTHYLKDMEFDSQNMVSSLDEHTLVISNLADSTRSLMSNIQT-------------- 176
           + A     L+ +   + + V+++DE      + AD+T  +  +++T              
Sbjct: 409 STAEINQMLERLRTGANSAVNAMDETKQSCQDAADTTTLVTESLETLTTYVFDINGLSNQ 468

Query: 177 ------ERKQVNDVLNRVMGLNEITEVISKIANETNLLALNAAIEAARSGEMGRG 225
                 E+  V++ +NR   LN I E++ ++ N++    LN+A   A + E   G
Sbjct: 469 IATAAEEQSAVSEEINR--NLNTIREMVEEL-NQSGKATLNSATSLAATKEQLTG 520