Pairwise Alignments

Query, 411 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 533 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score = 92.4 bits (228), Expect = 3e-23
 Identities = 64/249 (25%), Positives = 119/249 (47%), Gaps = 13/249 (5%)

Query: 103 VADHIENVNSDAQKATEDILNHICSLDHAAANFTHYLKDMEFDSQNMVSSLDEHTLVISN 162
           +A   E  N       + +     +++  +A       + E  +++   +  E  L   +
Sbjct: 272 IASTAEETNQAVNNQRDQLAQLATAMNEMSATIADVANNAESTAKDTKEATREAGLGDKD 331

Query: 163 L---ADSTRSLMSNIQTERKQVNDVLNRVMGLNEITEVISKIANETNLLALNAAIEAARS 219
           +    D   +L   ++   +QVN +   +M ++E+T VIS I+++TNLLALNAAIEAAR+
Sbjct: 332 VHASVDGIHALAKEVEQATQQVNKLKEEIMQISEVTAVISAISDQTNLLALNAAIEAARA 391

Query: 220 GEMGRGFAVVADEVRHLAQRAGEAASQISEEIESLRAEVTQRFEVAN------KESSEQN 273
           GE GRGFAVVADEVR LA R  ++  +I   I  L+          +      ++S +Q+
Sbjct: 392 GEQGRGFAVVADEVRQLASRTRQSTEEIQNTISLLQQRAVSAANAMDTSRDLAEKSVDQS 451

Query: 274 IKA----DMMIESVQSLRQSFSSVRELSERQITQIMLYNNDLEKNISGSMACTQFQDIVR 329
            KA     +++  ++ +    + +   +E Q       N ++    S ++  ++    + 
Sbjct: 452 TKAGNDLSLIVTHIKHVSDMATQIATAAEEQSAVAEEMNRNVCGINSSALEVSESATYLA 511

Query: 330 QKLDSIEAL 338
           Q+ +S+  L
Sbjct: 512 QESESLAEL 520



 Score = 32.0 bits (71), Expect = 5e-05
 Identities = 33/154 (21%), Positives = 65/154 (42%), Gaps = 37/154 (24%)

Query: 102 LVADHIENVNSDAQKATEDILNHICSLDHAAANFTHYLKDMEFDSQNMVSSLDEHTLVIS 161
           +VAD +  + S  +++TE+I                         QN +S L +  +  +
Sbjct: 400 VVADEVRQLASRTRQSTEEI-------------------------QNTISLLQQRAVSAA 434

Query: 162 NLADSTRSLM-SNIQTERKQVNDVLNRVMGLNEITEVISKIANETNLLALNAAIEAARSG 220
           N  D++R L   ++    K  ND+   V  +  ++++ ++IA         A  ++A + 
Sbjct: 435 NAMDTSRDLAEKSVDQSTKAGNDLSLIVTHIKHVSDMATQIATA-------AEEQSAVAE 487

Query: 221 EMGRGFAVVADEVRHLAQRAGEAASQISEEIESL 254
           EM R        +   A    E+A+ +++E ESL
Sbjct: 488 EMNRNVC----GINSSALEVSESATYLAQESESL 517