Pairwise Alignments

Query, 411 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 664 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score = 93.2 bits (230), Expect = 2e-23
 Identities = 75/276 (27%), Positives = 132/276 (47%), Gaps = 32/276 (11%)

Query: 1   MIRYLFERLENNKKRYLFFTITLSCT---VLLLGLELVRYWTPQWFYLPFAITA------ 51
           +++   +RL    K   F  +TL+     VLLL L ++RY      ++   +T       
Sbjct: 295 LLKTTTDRLFTANKHMFFVLVTLTVVLVLVLLLSLSVIRYLHDSVHHVYSTVTKARKHYD 354

Query: 52  LILTMTALVFSQ-GNLFVRFLQQIHEQETMKQKETVSAICDWIDEYRDLNGLVADHIENV 110
           L + +T     + G L + F   +++ E++  +   SA              +   +E +
Sbjct: 355 LSVRLTQNSSDEFGELAIAFNDMMNDFESVILQVRASA------------SKLQQAVEQM 402

Query: 111 NSDAQKATEDILNHICSLDHAAANFTHYLKDMEFDSQNMVSSLDEHT----------LVI 160
           +       +D++      +  A+  T     +   + N V++ +  T          + +
Sbjct: 403 DVCTHAMEQDVMAGHSEAEQVASAMTEMSATVAEIASNAVNASEASTAANHEAKAGNIEV 462

Query: 161 SNLADSTRSLMSNIQTERKQVNDVLNRVMGLNEITEVISKIANETNLLALNAAIEAARSG 220
              + + ++L ++I    K +N++   + G+  + +VIS IA +TNLLALNAAIEAAR+G
Sbjct: 463 GRTSAAIKALANDIDGASKAINELDREIHGIVVVLDVISGIAEQTNLLALNAAIEAARAG 522

Query: 221 EMGRGFAVVADEVRHLAQRAGEAASQISEEIESLRA 256
           EMGRGFAVVADEVR LAQR+  + S I    + L++
Sbjct: 523 EMGRGFAVVADEVRSLAQRSQTSTSDIKNMTDRLKS 558



 Score = 26.2 bits (56), Expect = 0.003
 Identities = 26/150 (17%), Positives = 62/150 (41%), Gaps = 21/150 (14%)

Query: 102 LVADHIENVNSDAQKATEDILNHICSLDHAAANFTHYLKDMEFDSQNMVSSLDEHTLVIS 161
           +VAD + ++   +Q +T DI N    L   A+     ++     + N V   ++  + + 
Sbjct: 530 VVADEVRSLAQRSQTSTSDIKNMTDRLKSGASIAVKAMERGLMQANNSVHEAEQAGIELK 589

Query: 162 NLADSTRSLMSNIQTERKQVNDVLNRVMGLNEITEVISKIANETNLLALNAAIEAARSGE 221
            + +                 D+++R      + E I+   +E + ++ +    A +  E
Sbjct: 590 RIVEQV---------------DIIDR------MNEQIATATHEQSAVSEDVNRNALKISE 628

Query: 222 MGRGFAVVADEVRHLAQRAGEAASQISEEI 251
           +      ++DE+R L +     A+ +S+E+
Sbjct: 629 IYLNTQRISDELRELTKALTYDAALMSKEV 658