Pairwise Alignments

Query, 504 a.a., cryptochrome-like protein cry2 from Vibrio cholerae E7946 ATCC 55056

Subject, 476 a.a., Deoxyribodipyrimidine photolyase from Pseudomonas stutzeri RCH2

 Score = 92.4 bits (228), Expect = 3e-23
 Identities = 68/242 (28%), Positives = 116/242 (47%), Gaps = 15/242 (6%)

Query: 223 ARHACSRMSPYLAWGNISLREMYQTLLKH--WSVAGFRRSLIALSSRLHWHCHFIQKFES 280
           A    S++S YLA G IS+R+     L +    +           + L W   +    + 
Sbjct: 233 AEPGTSQLSAYLAAGVISVRQCLHAALGYNQGELDSGSTGATTWINELLWREFYKHVLDG 292

Query: 281 ECEMEFRCVNRAYDSLLQQSSDAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRA 340
              +      R+    L     AP  +L AWQ G TG P+VDA MR L +TG+++ R+R 
Sbjct: 293 HPRLSMHRAFRSETDALPWRH-APY-ELEAWQQGRTGFPIVDAAMRQLQETGWMHNRLRM 350

Query: 341 MLVSVLTHHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQAGVTGTNTI---RIYNPTKQ 397
           ++   L+ ++ +DWR G  +  +  +D +   +   +Q  A  TGT+++   R++NP  Q
Sbjct: 351 VVAMFLSKNLLIDWREGERWFMRHLIDGDLAANNGGWQWSAS-TGTDSVPYFRLFNPISQ 409

Query: 398 AQEHDSEGQFIHKWVPELAQVPVPLLFEPWLMTPLEAQMYQVPLESPYLKPVMDLEASAK 457
           +Q  D  GQF+ +W+PEL  +    + +P         ++ V   + Y  P++DL AS  
Sbjct: 410 SQRFDPSGQFLRRWLPELQHLDKRDIHDP----SAHRSLFGV---TEYPAPIVDLGASRA 462

Query: 458 QA 459
           +A
Sbjct: 463 RA 464



 Score = 36.6 bits (83), Expect = 2e-06
 Identities = 27/106 (25%), Positives = 52/106 (49%), Gaps = 11/106 (10%)

Query: 6   LVWLKRDLRLTDHAPLQAALTSGRPTLLLYLFEP---MLLGDAHYSERHWRFVWQSLQAI 62
           L WL+ DLR +D++ L +A+ +G PT+ +YL  P   +   DA      W    ++L  +
Sbjct: 4   LFWLRNDLRTSDNSALTSAMAAG-PTVAIYLITPGQWLAHDDAPCKVDFW---LRNLVEL 59

Query: 63  NRDLAQSKGEVLI-VTSDWQT---CFARIAERYAIEAIYSHQEVGL 104
           +  L      +LI    DWQ+      ++ +   +  ++ ++E G+
Sbjct: 60  SAQLRALNVPLLIREVDDWQSVPAALLKLCQELDVHGLHYNEEYGV 105