Pairwise Alignments

Query, 504 a.a., cryptochrome-like protein cry2 from Vibrio cholerae E7946 ATCC 55056

Subject, 482 a.a., deoxyribodipyrimidine photo-lyase type I from Pseudomonas syringae pv. syringae B728a

 Score =  125 bits (315), Expect = 3e-33
 Identities = 126/497 (25%), Positives = 218/497 (43%), Gaps = 44/497 (8%)

Query: 4   INLVWLKRDLRLTDHAPLQAALTSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQAIN 63
           + L+WL+ DLR  D+  L AA+  G PTL +YL  P        ++    F  ++L  + 
Sbjct: 1   MQLIWLRSDLRAQDNTALTAAMERG-PTLAVYLLSPAQWRSHDDADCKVDFWLRNLVELE 59

Query: 64  RDLAQSKGEVLIVTSD-WQTC---FARIAERYAIEAIYSHQEVGLACTFQRDLALAQWCQ 119
           + L +    +LI  +D W       A +  ++ +E ++ +QE G+  T +RD A+ +   
Sbjct: 60  KALGELNVPLLIREADTWDQAPEVLATLCTQFKVEGLHLNQEYGINET-RRDQAVQKAMG 118

Query: 120 QHDIVWHEFPYAAVIRGAQTRKNWDEHWQ--------------QVMRSPCCDPDLTRANW 165
           +  + ++ +    + +          ++Q              + M  P   P    A  
Sbjct: 119 KAGVHFNSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEAMPHPVRTPQAQAAQS 178

Query: 166 LKLDAATLGLRSDIPATWQSKQAGMQTGGSDMAWATLEDFFARRGREYYRSISSPSLARH 225
           +K DA    ++    AT       +   G   A   ++ F A +   Y      P  A+ 
Sbjct: 179 IKSDAVPKQVKGF--ATPSKALRDLWPAGEAEARRRMDAFAAEQISYYKTERDFP--AKP 234

Query: 226 ACSRMSPYLAWGNISLREMYQTLLKHWSVAGFRRS---LIALSSRLHWHCHFIQKFESEC 282
             S++S YLA G IS R+     L   +   F       +   + L W   +        
Sbjct: 235 GTSQLSAYLAAGVISPRQCLHAALAS-NQGEFETGDVGTVTWINELLWREFYKHTLVGYP 293

Query: 283 EMEFRCVNRAYDSLLQQSSDAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRAML 342
            +      R     L+   DAP  +L AWQ   TG+P++DA MR L++TG+++ R+R ++
Sbjct: 294 RVSRHRAFRPETEALKWR-DAPE-ELRAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVV 351

Query: 343 VSVLTHHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQAGVTGTNT---IRIYNPTKQAQ 399
              LT ++ +DWR G  +  +  +D +   +   +Q  +  TGT++    RI+NP  Q++
Sbjct: 352 AMFLTKNLLIDWREGERFFMRHLIDGDLASNNGGWQWSSS-TGTDSAPYFRIFNPLSQSE 410

Query: 400 EHDSEGQFIHKWVPELAQVPVPLLFEPWLMTPLEAQMYQVPLESPYLKPVMDLEASAKQA 459
             D EG FI +W+PELA +    + +P L+  L          + Y KP++DL  S  +A
Sbjct: 411 RFDPEGVFIKRWLPELADMNKKQIHDPSLIGDLFG-------AADYPKPIVDLSKSRARA 463

Query: 460 RDRLWQWQKLPAVQAEA 476
              L  ++ LPA Q  A
Sbjct: 464 ---LAAFKALPARQPAA 477