Pairwise Alignments

Query, 504 a.a., cryptochrome-like protein cry2 from Vibrio cholerae E7946 ATCC 55056

Subject, 484 a.a., Deoxyribodipyrimidine photo-lyase type I from Synechococcus elongatus PCC 7942

 Score =  124 bits (310), Expect = 1e-32
 Identities = 122/470 (25%), Positives = 210/470 (44%), Gaps = 43/470 (9%)

Query: 6   LVWLKRDLRLTDHAPLQAALTSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQAINRD 65
           L W +RDLRL+D+  L AA       + L+  +P +L  A  +     ++   LQ + + 
Sbjct: 6   LFWHRRDLRLSDNIGLAAARAQSAQLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQR 65

Query: 66  LAQSKGEVLIVTSDWQTCFARIAERYAIEAIYSHQEVGLACTFQRDLALAQWCQQHDI-- 123
             Q+   +L++  D Q    ++A++   EA+Y +Q++       RD  +A   +   I  
Sbjct: 66  YQQAGSRLLLLQGDPQHLIPQLAQQLQAEAVYWNQDIE-PYGRDRDGQVAAALKTAGIRA 124

Query: 124 --VWHEFPYAA--VIRGAQTRKN-----WDEHWQQVMRSPCCDP-DLTRANWLKLDAATL 173
             +W +  ++   ++ G+    +     W     Q   +P   P +L   +  +L A   
Sbjct: 125 VQLWDQLLHSPDQILSGSGNPYSVYGPFWKNWQAQPKPTPVATPTELVDLSPEQLTAIAP 184

Query: 174 GLRSDIPATWQSKQAGMQTGGS-------DMAWATLEDFFARRGREYYRSISSPSLARHA 226
            L S++P     KQ G    G          A A L++F  R   +Y    + P+ A   
Sbjct: 185 LLLSELPTL---KQLGFDWDGGFPVEPGETAAIARLQEFCDRAIADYDPQRNFPAEA--G 239

Query: 227 CSRMSPYLAWGNISLREMYQTLLKHWSVAGF---RRSLIALSSRLHW---HCHFIQKFES 280
            S +SP L +G I +R+ +Q      +++     R S+      L W   + H +  F S
Sbjct: 240 TSGLSPALKFGAIGIRQAWQAASAAHALSRSDEARNSIRVWQQELAWREFYQHALYHFPS 299

Query: 281 ECEMEFRCVNRAYDSLLQQSS-DAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMR 339
             +  +R       SL QQ   +   A   AW    TG P+VDA MR L +TG+++ R R
Sbjct: 300 LADGPYR-------SLWQQFPWENREALFTAWTQAQTGYPIVDAAMRQLTETGWMHNRCR 352

Query: 340 AMLVSVLTHHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQAGV-TGTNTIRIYNPTKQA 398
            ++ S LT  + +DWR G  +  Q  +D +   +   +Q  A        +RI+NP  QA
Sbjct: 353 MIVASFLTKDLIIDWRRGEQFFMQHLVDGDLAANNGGWQWSASSGMDPKPLRIFNPASQA 412

Query: 399 QEHDSEGQFIHKWVPELAQV-PVPLLFEPWLMTPLEAQMYQVPLESPYLK 447
           ++ D+   +I +W+PEL  V P  L+     +TP+E + Y  P+ +  L+
Sbjct: 413 KKFDATATYIKRWLPELRHVHPKDLISGE--ITPIERRGYPAPIVNHNLR 460