Pairwise Alignments

Query, 504 a.a., cryptochrome-like protein cry2 from Vibrio cholerae E7946 ATCC 55056

Subject, 475 a.a., deoxyribodipyrimidine photo-lyase (RefSeq) from Shewanella amazonensis SB2B

 Score =  103 bits (258), Expect = 1e-26
 Identities = 123/457 (26%), Positives = 195/457 (42%), Gaps = 58/457 (12%)

Query: 6   LVWLKRDLRLTDHAPLQAALTS----GRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQA 61
           LVW ++DLR  D+  L  A       G     L++  P          R  RF+  +L A
Sbjct: 4   LVWFRQDLRTIDNQALTRACEDANARGGKVHALFIASPGQWQRHDMGVRQQRFLLANLNA 63

Query: 62  INRDLAQSKGEVLIVTSD--WQTCFARIA--ERYAIEAIYSHQEVGLACTFQRDLALA-- 115
           +  +LA     + ++  D  +QT  A  A  + + I +I++  ++ +    +RD AL   
Sbjct: 64  LGEELASMGIPLSLLKVDFFYQTAAALKAFCKEHGISSIFAGAQIEID-ERRRDQALLDK 122

Query: 116 ----QWCQQHDIVWHEFPYAAVIRGAQTRKN---------WDEHWQQVMRS----PCCDP 158
               Q   +H ++    P  +V+   Q  +          +   W+++  S    P   P
Sbjct: 123 GFPLQLTDEHCML----PPGSVVTQGQRDQGGAMYRVFTPFARRWREIAASRSLWPIPAP 178

Query: 159 DLTRANWLKLDAATLGLRSDIPAT--WQSKQAGMQTGGSDMAWATLEDFFARRGREYYRS 216
                  +    A  G  +D PA   W          G D A   L  F       Y  +
Sbjct: 179 ASVATPVVFTPFAFWGDINDDPALDKWPV--------GQDAALEKLSRFRELGMGRYGEN 230

Query: 217 ISSPSLARHACSRMSPYLAWGNISLREMYQTLLKHWSVAGFRRSLIALS--SRLHW---H 271
              P++     S +SPYLA G IS R+    LL+ +       S  A    + L W   +
Sbjct: 231 RDFPAI--DGTSSLSPYLALGVISPRQCLAALLEDFPDVFVNESSPARPWLNELVWREFY 288

Query: 272 CHFIQKFESECEMEFRCVNRAYDSLLQQSSDAPAAQLAAWQTGHTGIPLVDACMRCLIQT 331
            H +  F        +  N   D +  ++ +    +  AW+ G TG PLVDA MR L QT
Sbjct: 289 RHLLVAFPGLSMA--KNFNPLGDGIRWRNDET---EFEAWKHGRTGYPLVDAAMRQLNQT 343

Query: 332 GYLNFRMRAMLVSVLTHHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQAGVTGTNT--- 388
           G+++ R+R ++ S LT H+ +DWR G  Y  +  +D     +   +Q  AG TG +    
Sbjct: 344 GWMHNRLRMVVASFLTKHLLIDWRWGERYFREQLIDGCLAANNGGWQWAAG-TGCDAQPY 402

Query: 389 IRIYNPTKQAQEHDSEGQFIHKWVPELAQVPVPLLFE 425
            RI+NP  Q+++ D EG+FI K++PELAQ P   L +
Sbjct: 403 FRIFNPMSQSEKFDPEGRFIRKYLPELAQWPTRSLHQ 439