Pairwise Alignments

Query, 504 a.a., cryptochrome-like protein cry2 from Vibrio cholerae E7946 ATCC 55056

Subject, 478 a.a., Deoxyribodipyrimidine photolyase (NCBI) from Rhodospirillum rubrum S1H

 Score =  139 bits (350), Expect = 2e-37
 Identities = 126/474 (26%), Positives = 202/474 (42%), Gaps = 46/474 (9%)

Query: 6   LVWLKRDLRLTDHAPLQAALTSGRPTLLLYLFEPMLLGDAHY----SERHWRFVWQSLQA 61
           LVW + DLRL D+  L AAL SG P +  YL +     D H     + R W  + +SL +
Sbjct: 6   LVWFRDDLRLADNPALCAALDSGAPVIPFYLLDDST-SDGHRPLGGATRWW--LGRSLTS 62

Query: 62  INRDLAQSKGEVLIVTSDWQTCFARIAERYAIEAIYSHQEVGLACTFQRDLALAQ----- 116
           +   +AQ  G +++   +  +    +A      A+++++  G+      DL +       
Sbjct: 63  LAESIAQRGGRLVLRRGEALSAVPELAAETDAAALFANRLYGMDSLRDDDLFMVLRVAGL 122

Query: 117 WCQQHDIVWHEFPYAAVIRGAQTRKNWDEHWQQVMRS-----PCCDPDL----------- 160
             +  D      P A   +  +  + +   W+ +  +     P   PD            
Sbjct: 123 TVRLFDSGLLHRPEAVTTKTGRPFRVFTPFWKTLSATLDPGLPLAAPDSFPPVDDPPPAS 182

Query: 161 -TRANWLKLDAATLGLRSDIPATWQSKQAGMQTGGSDMAWATLEDFFARRGREYYRSISS 219
            + A+W  L+  T      +  TWQ  +AG Q        A LE FF     +Y      
Sbjct: 183 DSLADW-SLEPTTPDWAGGLRDTWQPGEAGAQ--------ARLEAFFNGPVADYASGRDR 233

Query: 220 PSLARHACSRMSPYLAWGNISLREMYQTLLKHWSVAGFRRSLIALSSRLHWHCHFIQKFE 279
           P   +   S++SP+L +G IS R+++     H    G    L  L  R   H H + +  
Sbjct: 234 PD--KPLTSKLSPHLRFGEISPRQVWTAARHHPPGGGMDAFLRELGWREFCH-HLLFQAP 290

Query: 280 SECEMEFRCVNRAYDSLLQQSSDAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMR 339
           +  E   +    A+    +     PA  LAAWQ+G TG P+VDA MR L  TG+++ R+R
Sbjct: 291 TMAEEPLKAEFLAFP-WTEAKEIGPA--LAAWQSGETGYPIVDAGMRELWHTGWMHNRVR 347

Query: 340 AMLVSVLTHHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQAG--VTGTNTIRIYNPTKQ 397
            +  S L   + + W+ G  +     +D  P  +   +Q  AG         RI+NP  Q
Sbjct: 348 MIAASFLIKDLLIPWQHGERWFWDTLVDACPANNAAGWQWVAGCGADAAPFFRIFNPVTQ 407

Query: 398 AQEHDSEGQFIHKWVPELAQVPVPLLFEPWLMTPLEAQMYQVPLESPYLKPVMD 451
            +  D EG ++ +W+PELA +P  L+  PW   PL  +   V L   Y  P++D
Sbjct: 408 GERFDPEGAYVRRWLPELADLPSSLIHRPWEAPPLILRQAGVTLGKTYPPPLID 461