Pairwise Alignments

Query, 504 a.a., cryptochrome-like protein cry2 from Vibrio cholerae E7946 ATCC 55056

Subject, 483 a.a., deoxyribodipyrimidine photo-lyase from Rhodopseudomonas palustris CGA009

 Score =  157 bits (397), Expect = 8e-43
 Identities = 136/488 (27%), Positives = 222/488 (45%), Gaps = 59/488 (12%)

Query: 6   LVWLKRDLRLTDHAPLQAALTSGRPTLLLYLFEPM-----LLGDAHYSERHWRFVWQSLQ 60
           +VW + DLRL DH  L AA  SG P L +Y+ + +      LG A    R W  + QSL+
Sbjct: 11  IVWFRDDLRLADHPALHAAAQSGAPVLCVYVLDEVSDDVRALGGA---VRWW--LAQSLR 65

Query: 61  AINRDLAQSKGEVLIVTSDWQTCFARIAERYAIEAIYSHQEVGLACTFQRDLALAQWCQQ 120
           A+  +L    G +++         A +A+++   A++ + E+ +A       ALA     
Sbjct: 66  ALESELRALGGALILRRGPTAAVLAELAQQHDAAAVHWN-EIEIAAHRAVADALADALTV 124

Query: 121 HDIVWHEF-------PYAAVIRGAQTRKNWDEHWQQVMR-----SPCCDPDLTR------ 162
             I +H         P A   +  +  + +   W++V+       P   P   R      
Sbjct: 125 AGIAYHRHRGDTLVEPSAIRSKDGRGMRVFTPFWRRVLSLGDPPQPLPRPTTLRPAPAVP 184

Query: 163 ----ANWLKLDAATLGLRSDIPATWQSKQAGMQTGGSDMAWATLEDFFARRGREYYRSIS 218
               ++W +L+         +  TW   +A  QT  +  A+  ++  +A  GR+Y     
Sbjct: 185 TEQLSDW-QLEPTAPDWAGGLRQTWTPGEAAAQTRLA--AFLAMQPGYAE-GRDY----- 235

Query: 219 SPSLARHACSRMSPYLAWGNISLREMYQTLLKHWSVAGFRRSLIA-----LSSRLHWHCH 273
            P   RH  S +SP+L +G IS R+++         A   R  IA       S + W   
Sbjct: 236 -PD--RHITSGLSPHLRFGEISPRQVWYAA----RFAAAERPAIAPDIDKFLSEVGWREF 288

Query: 274 FIQKFESECEMEFRCVNRAYDSLLQQSSDAPAAQLAAWQTGHTGIPLVDACMRCLIQTGY 333
                    ++  R +  A+D+   QS DA    L AWQ G TG P+VDA MR L  +G 
Sbjct: 289 CRHLLFDHPDLASRNLQPAFDAFPWQSDDAV---LTAWQRGRTGYPIVDAGMRELWHSGV 345

Query: 334 LNFRMRAMLVSVLTHHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQAG--VTGTNTIRI 391
           ++ R+R ++ S L  H+ +DWR G  +     +D +PG +   +Q  AG         R+
Sbjct: 346 MHNRVRMVVGSFLVKHLLIDWRLGEQWFWDTLVDADPGSNPGNWQWVAGCGADAAPYFRV 405

Query: 392 YNPTKQAQEHDSEGQFIHKWVPELAQVPVPLLFEPWLMTPLEAQMYQVPLESPYLKPVMD 451
           +NP  Q+++ D+ G +I +WVPELA++P  L+ +PW  TPLE     + L   Y  P++D
Sbjct: 406 FNPVLQSEKFDAGGAYIRRWVPELARLPNDLIHQPWTATPLELAAAGIKLGGNYPGPIVD 465

Query: 452 LEASAKQA 459
            +   ++A
Sbjct: 466 HKTGRQRA 473