Pairwise Alignments

Query, 504 a.a., cryptochrome-like protein cry2 from Vibrio cholerae E7946 ATCC 55056

Subject, 479 a.a., deoxyribodipyrimidine photo-lyase PhrB from Phaeobacter inhibens DSM 17395

 Score =  101 bits (251), Expect = 7e-26
 Identities = 113/490 (23%), Positives = 198/490 (40%), Gaps = 53/490 (10%)

Query: 8   WLKRDLRLTDHAPLQAALTSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQAINRDLA 67
           W++RDLRL D+  L AA+ +G P + +++FE +   D          +   L  + ++L 
Sbjct: 14  WVRRDLRLADNPALAAAVAAGVPVIPVFIFETL---DEDLGAAPRFRLGLGLAHLAKELE 70

Query: 68  QSKGEVLIVTSDWQTCFARIAERYAIEAIY---SHQEVGLACTFQRDLALAQWCQQHDIV 124
           Q    +++     Q    ++       A++   ++    +A    RD  + +  +   I 
Sbjct: 71  QRGARLILRRGPAQEVLTQLITETGAGAVHWTRAYDPQAIA----RDTGIKEQLKGQGIA 126

Query: 125 WHEF-------PYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTRANWLKLDAATLGLRS 177
              F       P+    +     + +  +W+ V      D D   A   ++ A      S
Sbjct: 127 AKSFGGHLLFEPWTVETKTGGMYRVYSPYWKSVRDR---DVDGLIAAPSRIPAPAHWPTS 183

Query: 178 DIPATWQSKQAGMQTG----------GSDMAWATLEDFFARRGREYYRSISSPSLARHAC 227
           D   +WQ   A M+ G          G D A   L +F   R  +Y +    P++   A 
Sbjct: 184 DDLDSWQMA-AAMRRGADVVAQYCRVGEDAAQERLAEFLDTRVADYKQDRDFPAV--DAT 240

Query: 228 SRMSPYLAWGNISLREMYQTLLK-----HWSVAGFRRSLIALSSRLHWHCHFIQKFESEC 282
           S +S  LAWG IS R M+   L+           F + ++      H   H         
Sbjct: 241 SGLSENLAWGEISPRRMWHHGLEARRAGKSGAEHFLKEIVWREFAYHLMFHTPHILTRNW 300

Query: 283 EMEFRCVNRAYDSLLQQSSDAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRAML 342
             E+   N          S+    ++ AW+ G TG   VDA MR L  TG ++ R R ++
Sbjct: 301 RPEWEHFNW---------SERDDDKVDAWRRGQTGYNFVDAAMRELYVTGKMHNRARMIV 351

Query: 343 VSVLTHHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQA--GVTGTNTIRIYNPTKQAQE 400
            S LT HM   WR G  +  +  +D++P  +   +Q  A  G   +   RI+NP  Q ++
Sbjct: 352 ASFLTKHMLTHWRIGQQWFEECLVDWDPASNAMGWQWVAGSGPDASPFFRIFNPDGQLEK 411

Query: 401 HDSEGQFIHKWVPELAQVPVPLLFEPWLMTPLEAQMYQVPLESPYLKPVMDLEASAKQAR 460
            D +G++   W+ E    P     + +  TPL    +++  +    +P +DL+    +A 
Sbjct: 412 FDPKGRYQSAWIAEGQANPPQTALDFYRATPLS---WELSPQDTRAEPFLDLKEGRARAL 468

Query: 461 DRLWQWQKLP 470
           +   Q ++LP
Sbjct: 469 EAYGQ-RELP 477