Pairwise Alignments

Query, 504 a.a., cryptochrome-like protein cry2 from Vibrio cholerae E7946 ATCC 55056

Subject, 478 a.a., deoxyribodipyrimidine photo-lyase (RefSeq) from Shewanella loihica PV-4

 Score = 93.6 bits (231), Expect = 1e-23
 Identities = 69/221 (31%), Positives = 109/221 (49%), Gaps = 10/221 (4%)

Query: 228 SRMSPYLAWGNISLREM-YQTLLKHWSVA-GFRRSLIALSSRLHWHCHFIQKFESECEM- 284
           S +SPYLA G IS R +  Q + +H  V    +       + L W   +        E+ 
Sbjct: 244 SGLSPYLAIGAISSRWLALQLVQRHPEVIYDTQHGAFTWLNELIWRDFYKHLLFHYPELI 303

Query: 285 EFRCVNRAYDSLLQQSSDAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRAMLVS 344
           +       Y+SL   +++A      AW  G TG P+VDA M+ L +TG+++ R+R ++ S
Sbjct: 304 KGGSFQPKYESLPWPNNEA---HFQAWCEGRTGYPIVDAAMKQLRRTGWMHNRLRMIVAS 360

Query: 345 VLTHHMNVDWRAGVTYLAQLFL--DFEPGIHYPQFQMQAGVTGTNTIRIYNPTKQAQEHD 402
            LT H+ VDW  G  +  Q  +  DF       Q+    G       RI+NP  Q+Q+ D
Sbjct: 361 FLTKHLLVDWHKGERFFMQQLIDGDFSANNGGWQWAASTGCDAQPYFRIFNPITQSQKFD 420

Query: 403 SEGQFIHKWVPELAQVPVPLLFEP--WLMTPLEAQMYQVPL 441
             G+FI K++PEL +VP   +  P  +L +  +A++Y  P+
Sbjct: 421 PRGEFIRKYLPELREVPDKQIHFPHDYLASQGKAEIYPAPI 461



 Score = 25.0 bits (53), Expect = 0.006
 Identities = 10/20 (50%), Positives = 14/20 (70%)

Query: 6  LVWLKRDLRLTDHAPLQAAL 25
          L+WL+RD RL D+  L  A+
Sbjct: 4  LLWLRRDFRLHDNPALSEAV 23