Pairwise Alignments

Query, 504 a.a., cryptochrome-like protein cry2 from Vibrio cholerae E7946 ATCC 55056

Subject, 538 a.a., deoxyribodipyrimidine photo-lyase from Marinobacter adhaerens HP15

 Score =  372 bits (955), Expect = e-107
 Identities = 203/505 (40%), Positives = 297/505 (58%), Gaps = 17/505 (3%)

Query: 6   LVWLKRDLRLTDHAPLQAALTSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQAINRD 65
           +VW KRDLR  DHAPL AA + G P + LY+ E         S R W F+  SL  ++R 
Sbjct: 31  VVWFKRDLRTRDHAPLVAAASLGEPVIPLYVIEDDYWQLPDTSGRQWAFIRDSLDDLDRQ 90

Query: 66  LAQSKGEVLIVTSDWQTCFARIAERYAIEAIYSHQEVGLACTFQRDLALAQWCQQHDIVW 125
           L ++  ++L++         ++  R  I+ I+ HQE G   TF+RD A+  WC ++ + +
Sbjct: 91  LRKAGSQLLVIRGSVTDALKKLQARQGIDRIFCHQETGGHWTFERDRAVIGWCSENQVEF 150

Query: 126 HEFPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPD--LTRANWLKLD-AATLGLRSDIPAT 182
            E+    V+R    R  WD  W ++MR P  +    +  ++ LK D AA  G   ++P +
Sbjct: 151 REWNQFGVVRRLSDRDVWDRAWTELMRQPVLEAPTAIPTSDTLKTDWAADNGQGFEVPDS 210

Query: 183 WQSKQAGMQTGGSDMAWATLEDFFARRGREYYRSISSPSLARHACSRMSPYLAWGNISLR 242
              +Q G    G  +    LE F  RR   Y  +ISSP+ A  ACSR+SP++A+G +SLR
Sbjct: 211 CPDRQKGGSARGEKL----LESFLDRRCVGYQYNISSPNTAVRACSRLSPHIAYGTVSLR 266

Query: 243 EMYQ----TLLKHWSVAGFRRSLIALSSRLHWHCHFIQKFESECEMEFRCVNRAYDSLLQ 298
           E+YQ    T     ++   ++SL +  SRLHWHCHFIQK E E E+EFR ++R  ++L  
Sbjct: 267 EIYQEAKATGNHRNTLPRKKKSLTSFRSRLHWHCHFIQKLEDEPELEFRAMHREMEALKT 326

Query: 299 QSSDAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRAMLVSVLTHHMNVDWRAGV 358
             +D+   +L  WQ G TG PLVDA MR L  +G++NFRMRAML+++ ++ + + WR   
Sbjct: 327 GPNDSE--RLQRWQEGQTGWPLVDASMRALAHSGWINFRMRAMLMAIASYQLWLHWRDPA 384

Query: 359 TYLAQLFLDFEPGIHYPQFQMQAGVTGTNTIRIYNPTKQAQEHDSEGQFIHKWVPELAQV 418
            +LA+LF DFEPGIHY Q QMQ+G+TG N +RIYNP  Q+Q+ D EG+FI +W+PELA V
Sbjct: 385 LHLARLFTDFEPGIHYSQTQMQSGLTGINALRIYNPVLQSQKLDPEGEFIRRWIPELAGV 444

Query: 419 PVPLLFEPWLMTPLEAQMYQVPLESPYLKPVMDLEASAKQARDRLWQWQKLPAVQAEAMR 478
           P  ++  PWLMTP + + Y     + Y+ PV D E +A+ AR  +  ++K    +AE  R
Sbjct: 445 PSEMIHTPWLMTPAQKERYG---GNTYIAPVCDHEQAARVARKAVGDFRKQSVSRAETDR 501

Query: 479 ILARHVRQAKP-RTSPRQPNKRQPE 502
           +L RH  +  P +  P  P KR+P+
Sbjct: 502 VLQRHGSRKGPIQKRPAVPGKRKPD 526