Pairwise Alignments

Query, 504 a.a., cryptochrome-like protein cry2 from Vibrio cholerae E7946 ATCC 55056

Subject, 480 a.a., deoxyribodipyrimidine photo-lyase from Klebsiella michiganensis M5al

 Score =  113 bits (282), Expect = 2e-29
 Identities = 137/492 (27%), Positives = 211/492 (42%), Gaps = 58/492 (11%)

Query: 5   NLVWLKRDLRLTDHAPLQAALTSGRPTLL-LYLFEPMLLGDAHYSERHWRFVWQSLQAIN 63
           +LVW + DLR+ D+  L AA       +L L++  P        + R   F+   L ++ 
Sbjct: 4   HLVWFRADLRMHDNLALAAACRDPHAEVLGLFIATPGQWRQHGMAARQAAFIVSHLHSLQ 63

Query: 64  RDLAQSKGEVLIV--TSDWQTCFARIA----ERYAIEAIYSHQ-EVGLACTFQRDLALAQ 116
             LA+ KG  L V    D+     R+A    ++      Y++Q E+      QRD A+  
Sbjct: 64  AALAE-KGIPLHVEQAEDFAASVKRLASFCGQQQVTHLFYNYQYEINER---QRDAAVEN 119

Query: 117 W-----CQQHDIVWHEFPYAAVIRGAQTR-------KNWDEHWQQVMRSPCCDPDLTRAN 164
                 CQ  D      P  +V+ G +         KN      Q     C      RA+
Sbjct: 120 TLAGVTCQGFDDSVL-LPPGSVLTGNREMYKVFTPFKNAFLRRLQEALPECVAAPKVRAS 178

Query: 165 WLKLDAATLGLRSDIPATWQSKQAGMQTGGSDMAWATLEDFFARRGREYYRSISSPSLAR 224
                AA   +  D P T    +  +       A A L  F  ++  +Y +    P++  
Sbjct: 179 GPI--AAASNVEIDYPQTPFDSE--LFAADEKSAIARLRGFCQQKAADYEQQRDLPAV-- 232

Query: 225 HACSRMSPYLAWGNISLREMYQTLLKHWSVAGFRRSLIALSSRLHW---HCHFIQKFESE 281
              SR+SP LA G +S R+    LL     A    +     + L W   + H +  + + 
Sbjct: 233 EGTSRLSPCLAVGALSPRQCLHRLLVEQPRALDGEAGAVWLNELIWREFYRHLMVYYPNL 292

Query: 282 CEMEFRCVNRAYDSLLQQSS--DAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMR 339
           C+       R +       +  D  +A L AWQ G TG P+VDA MR L  TG+++ R+R
Sbjct: 293 CK------GRPFIGWTDNVAWLDDKSA-LQAWQRGQTGFPIVDAAMRQLNTTGWMHNRLR 345

Query: 340 AMLVSVLTHHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQAGVTGTNT---IRIYNPTK 396
            ++ S L   + +DWR G  Y  +  +D +   +   +Q  A  TGT+     RI+NPT 
Sbjct: 346 MIVASFLVKDLRIDWRLGERYFIEQLIDGDLAANNGGWQWAAS-TGTDAAPYFRIFNPTT 404

Query: 397 QAQEHDSEGQFIHKWVPELAQVPVPLLFEPWLMTPLEAQMYQVPLESPYLKPVMDLEASA 456
           Q +  D  G+FI  W+PELA VP   + +PWL     A+   V L+ P  +P++D     
Sbjct: 405 QGERFDKAGRFIRHWLPELAGVPEKAVHQPWLW----AEKQGVKLDYP--RPIVD----H 454

Query: 457 KQAR-DRLWQWQ 467
           KQAR + L  W+
Sbjct: 455 KQARLETLAAWE 466