Pairwise Alignments

Query, 504 a.a., cryptochrome-like protein cry2 from Vibrio cholerae E7946 ATCC 55056

Subject, 499 a.a., deoxyribodipyrimidine photo-lyase from Burkholderia phytofirmans PsJN

 Score =  121 bits (303), Expect = 7e-32
 Identities = 124/488 (25%), Positives = 202/488 (41%), Gaps = 46/488 (9%)

Query: 6   LVWLKRDLRLTDHAPLQAALTSGRPTLLLYLFEPMLLG-----------DAHYSERHWRF 54
           LVW +RDLR TD+A L  AL        +++F+  +L            D    +R    
Sbjct: 15  LVWFRRDLRSTDNAALYYALKHCERVWCVFVFDTTILQPLVEAWQARHPDTQPQDRRIEL 74

Query: 55  VWQSLQAINRDLAQSKGEVLIVTSDWQTCFARIAERYAIEAIYSHQE---VGLAC--TFQ 109
           +  +L  ++  L  + G ++++  D      ++A+   ++A++++ +   V +A   T +
Sbjct: 75  ILGALGELDEALRANGGGLIVLYGDPADLVPKLADELGVDAVFANHDYEPVAIARDETVR 134

Query: 110 RDLALA--QWCQQHDIVWHEFPYAAVIRGAQTRKN----WDEHWQQVMRSPCCDPDLTRA 163
             LA A  QW    D V   F    V+ G          +   W + + +    P    +
Sbjct: 135 ETLAEAGRQWLTFKDQVI--FERDEVLTGQNKPFTVFTPYKNAWLKQLTAFDLKPYPVES 192

Query: 164 NWLKLDAATLGLRSDIPATWQSKQAGMQTGGSDM------AWATLEDFFAR----RGREY 213
               L A    L   +P   Q   A       D+      A   L+DF  R    + R  
Sbjct: 193 YTKHLAAPPSKLDRRLPTLDQLGFAPSNLAELDLPAGMSGAQRLLDDFATRIDSYKDRRD 252

Query: 214 YRSISSPSLARHACSRMSPYLAWGNISLREMYQTLLKHWSVAGFRRSLIALSSRLHWHCH 273
           + +   PS        +S +L +G +S+R + + L    S+           S L W   
Sbjct: 253 FPAAKGPSY-------LSIHLRFGTVSIRTLAR-LAHEMSLQPDGEGSTTWLSELIWRDF 304

Query: 274 FIQKFESECEM-EFRCVNRAYDSLLQQSSDAPAAQLAAWQTGHTGIPLVDACMRCLIQTG 332
           +         +         YD L  +         AAW  G TG PLVDA M  L +TG
Sbjct: 305 YFMILAHHPRLANGASFKEEYDQLRWEQGPEADEAFAAWCDGRTGYPLVDAAMLQLNRTG 364

Query: 333 YLNFRMRAMLVSVLTHHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQA--GVTGTNTIR 390
           Y++ R+R +  S L   + VDWR G  Y AQ   DF+   +   +Q  A  G       R
Sbjct: 365 YMHNRLRMVTASFLVKDLGVDWRLGERYFAQQLNDFDFSANNGGWQWAASTGCDAQPYFR 424

Query: 391 IYNPTKQAQEHDSEGQFIHKWVPELAQVPVPLLFEPWLMTPLEAQMYQVPLESPYLKPVM 450
           I+NP  Q+++ D+EG+FI +++P+LA++P   +  PWL        + V L   Y  P++
Sbjct: 425 IFNPITQSEKFDAEGRFIKRYLPQLARLPSKWIHAPWLAGTERLAEFGVVLGKDYPAPIV 484

Query: 451 D-LEASAK 457
           D  EA A+
Sbjct: 485 DHAEARAR 492