Pairwise Alignments

Query, 316 a.a., LysR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 325 a.a., transcriptional regulator, LysR family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  134 bits (337), Expect = 3e-36
 Identities = 83/295 (28%), Positives = 149/295 (50%), Gaps = 5/295 (1%)

Query: 17  LALFLTVVRCGSFALAAKQKSMSTSTLSRRIQQLEQDTGSILLIRNSKELVLTKEGEQLF 76
           + +F T+   GS + AA+Q ++S+S +S+++ +LE D G  L  RN++ L LT+ G   +
Sbjct: 9   MIVFATIAEKGSMSAAAQQLNLSSSAVSQQVAKLEMDMGISLFHRNTRHLTLTEAGHLFY 68

Query: 77  HSYAELFAQIERKQEEVEQAKRDYRGEIAISAPVLPLRHQLTPLALEFAELHPNVTLRMQ 136
            +  ++   +E  + ++   K    GE+ I+APV      L+         HP ++L +Q
Sbjct: 69  ENCIKIIKIVESGEHKLNALKGTPSGELKIAAPVGFGSGLLSQPLANLLAAHPQISLNLQ 128

Query: 137 VGSGLDYFSQRDLDIALRFGPQPESDWVARKLARNPSVLCASAELAAKLSTVTLTLAHPE 196
           +  G        +D+A+  GP  +S+ +AR LA    +LCA+     +       L HP 
Sbjct: 129 LQDGPIDIVNEGIDLAICIGPLSDSNLIARPLADWRMLLCAAPSYIPQHQI----LQHPG 184

Query: 197 QLKEHPLLSLNHKLPWIFHHHSVAQKVQFIPTARLCSDELDTIVQATLQGMGIARLPRGL 256
           +L+    +S ++  P    H    ++V+ +   R+  + + T++Q TL G+G A LP   
Sbjct: 185 ELQAFNRISHSYAKPEFLTHSQTQERVE-LSAQRISVNNMQTLIQLTLDGLGFAVLPEPE 243

Query: 257 MEPLLRSGQLIELLPEWEIEGADVYLLHPQRRFLPERTQALIDYIMTHWSRVAFS 311
           +   L SGQL+ LLPEW +    VY +   R   P + +  I  +  ++S++ FS
Sbjct: 244 VHQYLASGQLVTLLPEWSLRTYSVYSVTSARDKQPAKVKEAIAALSQYFSQIDFS 298