Pairwise Alignments

Query, 316 a.a., LysR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 295 a.a., transcriptional regulator, LysR family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  159 bits (402), Expect = 8e-44
 Identities = 99/289 (34%), Positives = 159/289 (55%), Gaps = 9/289 (3%)

Query: 17  LALFLTVVRCGSFALAAKQKSMSTSTLSRRIQQLEQDTGSILLIRNSKELVLTKEGEQLF 76
           L +F+TVV CGSF+LA ++  +S S +S+RI QLEQ  G  LL R ++ L LT  G + F
Sbjct: 7   LPIFVTVVECGSFSLAGQKLGLSKSAISKRISQLEQHLGIQLLQRTTRSLSLTDAGARYF 66

Query: 77  HSYAELFAQIERKQEEVEQAKRDYRGEIAISAPVLPLRHQLTPLALEFAELHPNVTLRMQ 136
                     +   + + + ++  RG + IS P++  R  + PL  EF + +P++ L+MQ
Sbjct: 67  EYIRPAVQLTQEGLDAISELQQTPRGNLRISVPMVFGRLYIAPLIAEFLKRYPDIQLQMQ 126

Query: 137 VGSGLDYFSQRDLDIALRFGPQPESDWVARKLARNPSVLCASAELAAKLSTVTLTLAHPE 196
           +   +        D+A+R G  P+S  +ARK+A   SV+CAS    A L+   L +  P 
Sbjct: 127 MDDKITDLIAGGFDLAIRIGELPDSSLIARKIAPCLSVICAS---PAYLTQHGLPMT-PC 182

Query: 197 QLKEHPLLSLNH---KLPWIFHHHSVAQKVQFIPTARLCSDELDTIVQATLQGMGIARLP 253
           +L +H  L  ++    + W FH     Q+VQ  P      +  D I QA L G+GIA LP
Sbjct: 183 ELTQHNCLFYSYFQDGVEWSFHSPDGMQRVQ--PKGNYQVNNSDAINQACLDGLGIANLP 240

Query: 254 RGLMEPLLRSGQLIELLPEWEIEGADVYLLHPQRRFLPERTQALIDYIM 302
           R ++EP L++G L  LL ++ +    +Y ++PQR++ P +   LI+++M
Sbjct: 241 RFIVEPDLQTGHLQALLTDYPLPEHGIYAVYPQRKYQPTKVTVLIEFLM 289