Pairwise Alignments

Query, 1309 a.a., ATP-dependent RNA helicase HrpA from Vibrio cholerae E7946 ATCC 55056

Subject, 1303 a.a., ATP-dependent RNA helicase HrpA (EC 3.6.4.13) from Pseudomonas fluorescens FW300-N2E2

 Score = 1211 bits (3132), Expect = 0.0
 Identities = 652/1305 (49%), Positives = 862/1305 (66%), Gaps = 31/1305 (2%)

Query: 15   KANSAASLKKALGECLIKDRFRFSKRIDGASKIKNESARNAVFDEIALDIAQSMMVVEQ- 73
            +A +   L K L   ++ DR R  +++    K  +E+       ++A  +A+     +Q 
Sbjct: 4    QAPAIDKLLKNLDHAMLADRHRLRRQLLELRKKPDEA-------KLAQWVARMQASCDQV 56

Query: 74   --RKQQMPKIEYPALLPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPKICAELGRGK 131
              RK  +P I Y   LP++ KRD+I  A+  HQV+I+AGETGSGKTTQLPKIC E+GRG+
Sbjct: 57   LARKASLPVIRYDDNLPIAAKRDEIKDALLKHQVLIIAGETGSGKTTQLPKICLEIGRGQ 116

Query: 132  YGLIGHTQPRRLAARSVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILLAE 191
            +GLIGHTQPRR+AARSVA+R+AEE+ T LG  VGY+VRF DQ    T IKLMTDGILLAE
Sbjct: 117  HGLIGHTQPRRIAARSVASRVAEELATPLGALVGYQVRFEDQSDANTLIKLMTDGILLAE 176

Query: 192  IQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSKHF 251
             QNDR+L +YDTII+DEAHERSLNIDF+LGYLK LLPRRPDLKVIITSATID ERFSKHF
Sbjct: 177  TQNDRYLERYDTIIVDEAHERSLNIDFLLGYLKTLLPRRPDLKVIITSATIDLERFSKHF 236

Query: 252  SNAPIIEVSGRTYPVEVRYRPLAGDDDSESDR--DQL---EGIFQAVDELCD------EG 300
             +API+EVSGRT+PVE  YRPL  + D E +R  D L   + I   +DE+          
Sbjct: 237  DDAPIVEVSGRTFPVETWYRPLTLEQDEEGNRVEDDLTVDQAILATLDEIAAYERSERRS 296

Query: 301  LGDILIFMNGEREIRDTADALSKRNLRDTEIVPLYARLSAGEQNKIFQPHAGRRIVLATN 360
             GD+L+F+ GEREIRD A+ L K  L+ TEI+PLYARLS  EQ +IFQ H GRR+VLATN
Sbjct: 297  PGDVLVFLPGEREIRDAAEMLRKAQLKHTEILPLYARLSPAEQQRIFQSHPGRRVVLATN 356

Query: 361  VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGICI 420
            VAETSLTVPGI+YVID GTARISRYSYR KVQRLPIE ISQASANQRKGRCGR E GIC+
Sbjct: 357  VAETSLTVPGIRYVIDSGTARISRYSYRAKVQRLPIEAISQASANQRKGRCGRVEPGICV 416

Query: 421  RLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRLL 480
            RLYSEEDFL RPEFTDPEILRTNLA+VILQM  L LG+I  FPF+E PD + I DG  LL
Sbjct: 417  RLYSEEDFLGRPEFTDPEILRTNLAAVILQMLHLRLGEITDFPFIEPPDGKAISDGFNLL 476

Query: 481  EELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKLGCLKEVMIIASALSIQD 540
            +EL A+     D   +LT  G+QLARLP+DPR+ RM+LEA+KLG L+EV+I+ASA+SIQD
Sbjct: 477  QELSAV-----DRNSQLTPLGRQLARLPVDPRMGRMLLEAAKLGSLQEVLIVASAMSIQD 531

Query: 541  PRERPSDKQQSADDKHRRFNHEDSDFLTLVNLWHYIGQQQKALTSNQFRRQCKLDYLNYL 600
            PRERP ++QQ+AD  H ++   DSDF  LVNLW    +Q++ALT++  R  C+ ++LNYL
Sbjct: 532  PRERPPERQQAADQAHAQWKDADSDFAGLVNLWRGFEEQRQALTASPLRNWCRKNFLNYL 591

Query: 601  RVREWQDVYTQLHQSTREMGFKLNDEPGSYHAVHSAILVGLLSHIGMKDQEKNEYHGARN 660
            R+REW+D + QL    R+M   LN EP  Y  +H A+L GLLS IG K +E  +Y GAR 
Sbjct: 592  RLREWRDSHRQLSLICRDMQLSLNKEPADYPKLHKAVLSGLLSQIGQKTEE-GDYLGARQ 650

Query: 661  ARFNIFPASGLFKKQPKWVMSAELVETSKLWARVVAKIEPDWIEPLAKHLSKRSYSEPHW 720
             RF + P+SGL KK+P+W+M+AELVET+KL+AR+VAKIEPDWIEPLA HL K+++ EPHW
Sbjct: 651  RRFWVHPSSGLGKKRPQWLMTAELVETTKLYARMVAKIEPDWIEPLAGHLIKKNHFEPHW 710

Query: 721  SKKNAAVMAYEKVMLYGIPIVPKRLVNYGTIDPVLSREIFIRSALVEGDWETKHAFFKQN 780
             KK   V+AYE++ L+G+ +V +R V+YG +DPV+SRE+FIR ALV G+ ++K      N
Sbjct: 711  EKKRGQVVAYEQITLFGLIVVGRRPVHYGPVDPVVSRELFIREALVRGEIQSKAKCLSAN 770

Query: 781  RALLAEVEELEHKSRRRDILVDDEELFQFYDQRVGTEVVSGRHFDAWWKTASRKTPDLLS 840
              LL +++ELE K+RRRDIL D+E L+ FYD R+  E+     FD+W++  S+K P LL 
Sbjct: 771  TRLLEQLDELEAKARRRDILADEETLYAFYDARLPAEIHQTATFDSWYRINSQKDPQLLI 830

Query: 841  FEKEMLFKGDASHITDLDYPNFWHQGNLKLKLSYQFEPGENSDGVTVHIPLPILNQVEPH 900
              +E +   +AS +T   YP+    G+L L LSY FEP    DGVT+ +P P+L  + P 
Sbjct: 831  MREEDVLAREASEVTAAHYPDTLRVGDLTLPLSYHFEPNHPRDGVTLRVPAPLLPMLPPE 890

Query: 901  GFDWQIPGLRHELVVSLIKSLPKTLRKNFVPAPNYADAFLARVTPFEMPLLDAMEKELRR 960
              +W +PG+     ++L+++LPK LRKNFVP P++  A L R+T  E  L  A+ +EL R
Sbjct: 891  RLEWLVPGVIEAKCIALVRNLPKALRKNFVPVPDFVKAALQRITFAEGSLPQALGRELLR 950

Query: 961  MTGVTVLREDW--KLDQLPAHLKITYRAVDHRNRKLNESCDLHELKESLKEKVQETLSQV 1018
            MTG  V  E W     Q+ +HL++    VD + + L E  DL EL     E  Q  L+ V
Sbjct: 951  MTGARVSDEAWAEAAQQVESHLRMNLEIVDGQGKFLGEGRDLAELTARFAEASQAALA-V 1009

Query: 1019 ADDDIEQRDLHTWSFGELPKVYQQKRGGFEVRAYPALVDKKDSVEIKLFETEQEQLSAMR 1078
                  Q  +    F  + +  QQK  G  +  YPALV++   V+   F T  E     R
Sbjct: 1010 PQTAKSQAPVEAKIFAPVAEKTQQKIAGLSMTVYPALVEEGGVVKEGRFPTPAEAEFQHR 1069

Query: 1079 AGQRRLILLNVPSPIKYLHANLPNKSKLGLYFNPYGKVLDLIDDCIACGVDK-LIEERGG 1137
               +RL++  +    K+L   LP  ++LGL +   G++  L++D +   +D  ++E    
Sbjct: 1070 RALQRLLMQQLAESAKFLRGKLPGLTELGLLYRELGRIDSLVEDILLASLDSCVLEGEAS 1129

Query: 1138 MVWEPQAFEALKEHVRAELGDTVVEIAKQVETILTTAYNINKRLKGKVDFTMAFALSDVK 1197
            +  +  A  +L E  R    +    +AK    IL   + + KR KGK+D   A AL+D+K
Sbjct: 1130 LPRDGAALASLAERKRGGWTEHAERLAKLTLDILKLWHGLQKRFKGKIDLAQAVALNDIK 1189

Query: 1198 AQIEGLIFSGFATECGWKRLPDILRYMRAIERRMEKLPVDPNKDRLHMLKIESVANKYKE 1257
             Q+  L++ GF  E   + L ++ RY++AIE+R EKL     KDR+   ++ ++  +Y+ 
Sbjct: 1190 QQLSHLVYPGFVRETPHQWLKELPRYLKAIEQRFEKLGSQVQKDRVWSGELSNLWAQYQA 1249

Query: 1258 LLNKIPKGMAIPDNVREIRWMLEELRVSYFAQQLGTPYPVSDKRI 1302
              +K  +       +   RW LEE RVS FAQQLGT  P+SDKR+
Sbjct: 1250 RASKHAQEGKRDPQLELYRWWLEEYRVSLFAQQLGTKVPISDKRL 1294