Pairwise Alignments

Query, 1309 a.a., ATP-dependent RNA helicase HrpA from Vibrio cholerae E7946 ATCC 55056

Subject, 1360 a.a., ATP-dependent helicase HrpA from Pseudomonas stutzeri RCH2

 Score = 1165 bits (3013), Expect = 0.0
 Identities = 648/1353 (47%), Positives = 851/1353 (62%), Gaps = 82/1353 (6%)

Query: 21   SLKKALGECLIKDRFRFSKRIDGASKIKNESARNAVFDEIALDIAQSMMVVEQRKQQMPK 80
            +L K L + L  DR R  +++    K  +E+      +     +A+    VE R++ +P 
Sbjct: 10   TLLKNLDQALFADRHRLRRQLHELRKQPDEAKLAQWLERFQASVAK----VEARRRSVPS 65

Query: 81   IEYPALLPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQP 140
            I Y   LP++ KRD+I  A+  HQV+++AGETGSGKTTQLPKIC E+GRG +GLIGHTQP
Sbjct: 66   IRYDDSLPIAAKRDEIKAALEKHQVLVIAGETGSGKTTQLPKICLEIGRGVHGLIGHTQP 125

Query: 141  RRLAARSVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILLAEIQNDRFLNQ 200
            RRLAARSVA R+AEE+ T LG  VGY+VRF DQ  D + IKLMTDGILLAE Q+DRFL +
Sbjct: 126  RRLAARSVATRVAEEIGTPLGELVGYQVRFEDQSKDSSLIKLMTDGILLAETQHDRFLER 185

Query: 201  YDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSKHFSNAPIIEVS 260
            YDTII+DEAHERSLNIDF+LG+LK LLPRRPDLKVIITSATID +RFS+HF  API+EVS
Sbjct: 186  YDTIIVDEAHERSLNIDFLLGFLKTLLPRRPDLKVIITSATIDLQRFSEHFDGAPIVEVS 245

Query: 261  GRTYPVEVRYRPLAGDDDSESDR--DQL---EGIFQAVDEL------CDEGLGDILIFMN 309
            GRTYPVE  YRPLA + D + +R  D L   +GI  A+DE+        +  GD+L+F+ 
Sbjct: 246  GRTYPVETWYRPLAAEIDEDGNRVEDDLTVDQGILAALDEITAHEQSVGKRPGDVLVFLP 305

Query: 310  GEREIRDTADALSKRNLRDTEIVPLYARLSAGEQNKIFQPHAGRRIVLATNVAETSLTVP 369
            GEREIRD A+ L K NL+ TE++PLYARL+  EQ KIFQP  GR+IVLATNVAETSLTVP
Sbjct: 306  GEREIRDAAEVLRKANLKFTEVLPLYARLTPAEQQKIFQPRPGRKIVLATNVAETSLTVP 365

Query: 370  GIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGICIRLYSEEDFL 429
            GI+YVID GTARISRYSYR KVQRLPIE +SQASANQRKGRCGR E GICIRLYSEEDFL
Sbjct: 366  GIRYVIDSGTARISRYSYRAKVQRLPIEAVSQASANQRKGRCGRVEPGICIRLYSEEDFL 425

Query: 430  SRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRLLEELGAINDQ 489
             RPEFTDPEILRTNLA+VILQM  L LGDI+ FPF+E PD + I DG  LL+EL A+N +
Sbjct: 426  GRPEFTDPEILRTNLAAVILQMLHLRLGDIQDFPFIEPPDGKAISDGFNLLQELSAVNRE 485

Query: 490  IKDPKKRLTESGKQLARLPIDPRLARMVLEASKLGCLKEVMIIASALSIQDPRERPSDKQ 549
                  +LT  G+QLARLPIDPRL RM+LEA++ G L EV+I+ASALS+QD RERP+D+Q
Sbjct: 486  -----NQLTPMGRQLARLPIDPRLGRMLLEAAQQGSLAEVLIVASALSVQDVRERPADRQ 540

Query: 550  QSADDKHRRFNHEDSDFLTLVNLWHYIGQQQKALTSNQFRRQCKLDYLNYLRVREWQDVY 609
            Q+AD  H ++   DSDF  L+NLW    ++++ L SN  R  C+ ++LNYLR+REW+D +
Sbjct: 541  QAADQAHAQWKDPDSDFAALINLWRGFEEKRQELGSNPLRTWCRKNFLNYLRLREWRDAH 600

Query: 610  TQLHQSTREMGF-KLNDEPGSYHAVH-------------SAILVGL-------------- 641
             QL    RE+         GS  A H             SA+  G+              
Sbjct: 601  RQLTLIARELKLGSGRSADGSGQAAHADKARRVEDGEASSALSAGVSTQPAPTKDTKVNV 660

Query: 642  -----------------------------LSHIGMKDQEKNEYHGARNARFNIFPASGLF 672
                                         LS IG K +E  ++ GAR  RF + P+S + 
Sbjct: 661  ILRQQAEASEAAQKAKSYASVHKAILAGLLSQIGNKTEE-GDFLGARQRRFWVHPSSVIG 719

Query: 673  KKQPKWVMSAELVETSKLWARVVAKIEPDWIEPLAKHLSKRSYSEPHWSKKNAAVMAYEK 732
            +K+P W+M+AELVET+KL+AR+VAKIEPDWIEPLA HL K+++ EPHW KK   V+AYE+
Sbjct: 720  RKKPNWLMAAELVETTKLFARMVAKIEPDWIEPLAGHLIKKNHFEPHWEKKRGQVVAYEQ 779

Query: 733  VMLYGIPIVPKRLVNYGTIDPVLSREIFIRSALVEGDWETKHAFFKQNRALLAEVEELEH 792
            V LYG+ +V +R V+YG IDP  +RE+FIR  LV G+  ++      NR LL  ++ELE 
Sbjct: 780  VTLYGMIVVGRRPVHYGPIDPPAARELFIREGLVRGEINSRARALSANRELLERLDELEA 839

Query: 793  KSRRRDILVDDEELFQFYDQRVGTEVVSGRHFDAWWKTASRKTPDLLSFEKEMLFKGDAS 852
            K+RRRDIL D+E LF +YD R+  ++     F+ W+K  S K P LL   +E +   +AS
Sbjct: 840  KARRRDILADEETLFDYYDARLPADIYQTASFENWYKRESAKNPQLLIMREEDVLAREAS 899

Query: 853  HITDLDYPNFWHQGNLKLKLSYQFEPGENSDGVTVHIPLPILNQVEPHGFDWQIPGLRHE 912
             +T   YP++   G L+L L Y FEP    DGVT+ +P P+L Q+     DW +PGL   
Sbjct: 900  EVTAAQYPDYLRIGELQLPLEYHFEPNHPRDGVTLRVPAPLLPQLRSERLDWLVPGLLET 959

Query: 913  LVVSLIKSLPKTLRKNFVPAPNYADAFLARVTPFEMPLLDAMEKELRRMTGVTVLREDW- 971
              V+L+++LPK LRKNFVP P++  A LAR+   E  L +A+ +EL RMTG  V  + W 
Sbjct: 960  KAVALVRNLPKALRKNFVPVPDFVGAALARIAFGEGSLPEALGRELLRMTGARVSDDAWA 1019

Query: 972  -KLDQLPAHLKITYRAVDHRNRKLNESCDLHELKESLKEKVQETLSQVADDDIEQRDLHT 1030
                 L +HLK+    VD R + L E  DL EL     E  Q  L+       EQ+ +  
Sbjct: 1020 EAAAGLESHLKMNIEVVDARGKFLGEGRDLAELTARFAEASQAALAP-PQQKAEQKPVEA 1078

Query: 1031 WSFGELPKVYQQKRGGFEVRAYPALVDKKDSVEIKLFETEQEQLSAMRAGQRRLILLNVP 1090
              F ++ +  Q K  G  +  YPALV++   V+   F T+ E     R   +RL+L  + 
Sbjct: 1079 KGFAQVAEKAQAKMAGLSMTVYPALVEEAGVVKEGRFPTQAEAEWQHRRALQRLLLQQLA 1138

Query: 1091 SPIKYLHANLPNKSKLGLYFNPYGKVLDLIDDCIACGVDK-LIEERGGMVWEPQAFEALK 1149
             P KYL   LP  ++LGL +   GKV  L++D +   +D  +++    +  +  A  +L 
Sbjct: 1139 EPAKYLRNKLPGLTELGLLYRDMGKVDALVEDILLASLDSCILDGEAQLPRDGAALASLA 1198

Query: 1150 EHVRAELGDTVVEIAKQVETILTTAYNINKRLKGKVDFTMAFALSDVKAQIEGLIFSGFA 1209
            E  R +       +A+    IL   + + KR KGK+D   A AL+D+KAQ+  L++ GF 
Sbjct: 1199 ERKRGDWTAHAERLARLTLEILKHWHGLQKRFKGKIDLAQAVALNDIKAQLGNLVYPGFV 1258

Query: 1210 TECGWKRLPDILRYMRAIERRMEKLPVDPNKDRLHMLKIESVANKYKELLNKIPKGMAIP 1269
             E   + L +  RY++AIE+R EK+     +DR+   ++     +Y+  LNK  +     
Sbjct: 1259 RETPAEWLKEYPRYLKAIEQRFEKIGAQLQRDRVWSGELAGYWEQYQTRLNKHLQEGKRD 1318

Query: 1270 DNVREIRWMLEELRVSYFAQQLGTPYPVSDKRI 1302
              +   RWMLEE RVS +AQQLGT   VSDKR+
Sbjct: 1319 AELALYRWMLEEYRVSLWAQQLGTRMAVSDKRL 1351