Pairwise Alignments

Query, 1309 a.a., ATP-dependent RNA helicase HrpA from Vibrio cholerae E7946 ATCC 55056

Subject, 844 a.a., ATP-dependent helicase HrpB from Pseudomonas syringae pv. syringae B728a

 Score =  236 bits (601), Expect = 8e-66
 Identities = 156/468 (33%), Positives = 249/468 (53%), Gaps = 28/468 (5%)

Query: 87  LPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHT----QPRR 142
           LP+      + QA++     ++    G+GKTT++P    E    +  L G T    +PRR
Sbjct: 4   LPIDSVLPALRQALSTRHEAVLEAPPGAGKTTRVPLALLE----ETWLAGQTILMLEPRR 59

Query: 143 LAARSVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILLAEIQNDRFLNQYD 202
           LAAR+ A R+A E+  ++G  VGY++R   ++  +T+I+++T+GIL   +Q+D  L    
Sbjct: 60  LAARAAAERLASELGEKVGETVGYRIRLESRVGPKTRIEVVTEGILTRRLQDDPALEGVG 119

Query: 203 TIIIDEAHERSLNIDFILGYL---KQLLPRRPDLKVIITSATIDPERFSKHFSNAPIIEV 259
            +I DE HERSL+ D  L      ++L      LK+++ SAT++ ER +    +AP++  
Sbjct: 120 LLIFDEFHERSLDADLALALSLNGRELFRDDQPLKILLMSATLEGERLAALLDDAPVVRS 179

Query: 260 SGRTYPVEVRY-RPLAGDDDSESDRDQLEGIFQAVDELCDEGLGDILIFMNGEREIR--- 315
            GR +PV +++ RP    +  E        + Q V +      G +L+F+ G+ EIR   
Sbjct: 180 DGRMFPVSMQWGRPFQPGEFVEPR------VVQTVLDALGSESGSLLVFLPGQAEIRRVN 233

Query: 316 -DTADALSKRNLRDTEIVPLYARLSAGEQNKIFQP--HAGRRIVLATNVAETSLTVPGIK 372
              A+AL +R   D  + PL+  L    Q    +P     R++VLATN+AETSLT+ G++
Sbjct: 234 QQLAEALGER--ADILLCPLHGELDLNAQRAAIEPAPKGTRKVVLATNIAETSLTIDGVR 291

Query: 373 YVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGICIRLYSEEDFLSRP 432
            VID G AR+ R+   + + RL  + IS+ASA QR GR GR E G+C RL+SE       
Sbjct: 292 VVIDAGLARVPRFDPGSGMTRLETQRISRASATQRAGRAGRLEPGVCYRLWSEAQHDQLA 351

Query: 433 EFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRLLEELGAINDQIKD 492
            +   EIL+ +LA + LQ+   G+   +   +++ P          LL  L A+N+Q   
Sbjct: 352 AYGAAEILQADLAGLALQLARWGVTPAQ-LVWLDVPPAAAYAQAQDLLVRLEALNNQPGQ 410

Query: 493 PKKRLTESGKQLARLPIDPRLARMVLEASKLGCLKEVMIIASALSIQD 540
           P   LT  G+ +A LP  PR+A ++L    LG  +    +A+ L+ +D
Sbjct: 411 P-PALTPHGQAMAELPAHPRIAHLLLRGHALGLGELACDVAALLAERD 457