Pairwise Alignments

Query, 1309 a.a., ATP-dependent RNA helicase HrpA from Vibrio cholerae E7946 ATCC 55056

Subject, 1303 a.a., ATP-dependent helicase HrpA from Pseudomonas syringae pv. syringae B728a

 Score = 1198 bits (3100), Expect = 0.0
 Identities = 641/1299 (49%), Positives = 855/1299 (65%), Gaps = 25/1299 (1%)

Query: 18   SAASLKKALGECLIKDRFRFSKRIDGASKIKNESARNAVFDEIALDIAQSMMVVEQRKQQ 77
            S   L K L   +I +R R  +++    K  +E+        +    AQ    V  R++ 
Sbjct: 7    SIDQLLKNLDHAMISERHRLRRQLHDLRKKPDEAKLAQWVARVQASCAQ----VTARRES 62

Query: 78   MPKIEYPALLPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGH 137
            +P I Y   LP++ KRD+I +A+  HQV+I+AGETGSGKTTQLPKIC E+GRG++GLIGH
Sbjct: 63   VPAIRYDDNLPIAAKRDEIKEALLKHQVLIIAGETGSGKTTQLPKICLEIGRGQHGLIGH 122

Query: 138  TQPRRLAARSVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILLAEIQNDRF 197
            TQPRR+AARSVA+R+AEE+ T LG  VGY+VRF DQ    T IKLMTDGILLAE Q+DRF
Sbjct: 123  TQPRRIAARSVASRVAEEIGTPLGALVGYQVRFEDQSDSNTLIKLMTDGILLAETQHDRF 182

Query: 198  LNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSKHFSNAPII 257
            L +YDTII+DEAHERSLNIDF+LGYLK LLPRRPDLKVIITSATID +RFS+HF++AP+I
Sbjct: 183  LERYDTIIVDEAHERSLNIDFLLGYLKTLLPRRPDLKVIITSATIDLQRFSEHFNDAPVI 242

Query: 258  EVSGRTYPVEVRYRPLAGDDDS-----ESDRDQLEGIFQAVDELCD------EGLGDILI 306
            EVSGRT+PV+V YRPL  + D      E D    + I   +DEL        +  GD+L+
Sbjct: 243  EVSGRTFPVDVWYRPLTSEQDEDGNSVEEDLTVDQAILATLDELAAFERSERKSPGDVLV 302

Query: 307  FMNGEREIRDTADALSKRNLRDTEIVPLYARLSAGEQNKIFQPHAGRRIVLATNVAETSL 366
            F+ GEREIRD A+ L K  L+ TEI+PLYARLS  EQ +IFQ H GRR+VLATNVAETSL
Sbjct: 303  FLPGEREIRDAAEVLRKAQLKHTEILPLYARLSPAEQQRIFQSHPGRRVVLATNVAETSL 362

Query: 367  TVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGICIRLYSEE 426
            TVPGI+YVID GTARISRYSYR KVQRLPIE +SQASANQRKGRCGR E G+C+RLYSEE
Sbjct: 363  TVPGIRYVIDTGTARISRYSYRAKVQRLPIEAVSQASANQRKGRCGRVEPGLCVRLYSEE 422

Query: 427  DFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRLLEELGAI 486
            DF  RPEFTDPEILRTNLA+VILQM  L LG+I  FPF+E PD + I DG  LL+EL A+
Sbjct: 423  DFNGRPEFTDPEILRTNLAAVILQMLHLRLGEITDFPFIEPPDGKAISDGFNLLQELSAV 482

Query: 487  NDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKLGCLKEVMIIASALSIQDPRERPS 546
            N +      +LT  G+QLARLP+DPR+ RM+LEA+K G L+EV+I+ASA+S+QD RERP 
Sbjct: 483  NRE-----NQLTPLGRQLARLPVDPRMGRMLLEAAKQGSLQEVLIVASAMSVQDVRERPP 537

Query: 547  DKQQSADDKHRRFNHEDSDFLTLVNLWHYIGQQQKALTSNQFRRQCKLDYLNYLRVREWQ 606
            ++QQ+AD  H ++   DSDF  +VNLW    +Q++ LT++  R  C+ ++LNYLR+REW+
Sbjct: 538  ERQQAADQAHAQWKDADSDFAGMVNLWRGFEEQRQTLTASPLRNWCRRNFLNYLRLREWR 597

Query: 607  DVYTQLHQSTREMGFKLNDEPGSYHAVHSAILVGLLSHIGMKDQEKNEYHGARNARFNIF 666
            D + QL    R++   +N EP  Y   H AIL GLLS IG K  E  +Y GAR  RF I 
Sbjct: 598  DSHRQLSLICRDLQLTVNKEPADYPKFHKAILSGLLSQIGQKTDE-GDYLGARQRRFWIH 656

Query: 667  PASGLFKKQPKWVMSAELVETSKLWARVVAKIEPDWIEPLAKHLSKRSYSEPHWSKKNAA 726
            P+SGL KK+P+W+M+AELVET+KL+AR+VAKI+ DWIEPLA HL K+++ EPHW KK   
Sbjct: 657  PSSGLGKKRPQWLMTAELVETTKLYARMVAKIDSDWIEPLAGHLIKKNHFEPHWEKKRGQ 716

Query: 727  VMAYEKVMLYGIPIVPKRLVNYGTIDPVLSREIFIRSALVEGDWETKHAFFKQNRALLAE 786
            V+A+E++ L+G+ +V +R V++G IDPV+SRE+FIR  LV GD  ++      N  LL +
Sbjct: 717  VVAFEQITLFGLIVVGRRPVHFGPIDPVVSRELFIREGLVRGDILSRAKCLSANTRLLEQ 776

Query: 787  VEELEHKSRRRDILVDDEELFQFYDQRVGTEVVSGRHFDAWWKTASRKTPDLLSFEKEML 846
            ++ELE K+RRRDIL D++ L+ FY+ R+  E+     FD+W+KT S+K P LL   +E +
Sbjct: 777  LDELEAKARRRDILADEDTLYSFYEARIPAEIHQTATFDSWYKTESQKNPQLLIMREEDV 836

Query: 847  FKGDASHITDLDYPNFWHQGNLKLKLSYQFEPGENSDGVTVHIPLPILNQVEPHGFDWQI 906
               +AS +T   YP+    G+L L LSY FEP    DGVT+ +P P+L  +     +W +
Sbjct: 837  LAREASEVTAAQYPDTLRLGDLSLSLSYHFEPNHPRDGVTLRVPAPLLLSLPAERLEWLV 896

Query: 907  PGLRHELVVSLIKSLPKTLRKNFVPAPNYADAFLARVTPFEMPLLDAMEKELRRMTGVTV 966
            PGL     ++L+++LPK +RKNFVP P++  A L R+T  E  L  A+ +EL RMTGV V
Sbjct: 897  PGLLESKCIALVRNLPKAVRKNFVPVPDFIKAALQRITFGEGSLPQALGRELLRMTGVRV 956

Query: 967  LREDW--KLDQLPAHLKITYRAVDHRNRKLNESCDLHELKESLKEKVQETLSQVADDDIE 1024
              E W     QL  HLK+    VD   + L E  DL EL     E  Q  L+ V      
Sbjct: 957  SDEAWAEAAQQLEGHLKMNLEIVDGSGKFLGEGRDLAELTARFAEASQAALA-VPQTAKS 1015

Query: 1025 QRDLHTWSFGELPKVYQQKRGGFEVRAYPALVDKKDSVEIKLFETEQEQLSAMRAGQRRL 1084
            Q+ +   +F  + +  QQ   G  +  YPALV++  +V+   F T+ E     R   +RL
Sbjct: 1016 QQPVQAKAFAAVAQKTQQNIAGLSMTVYPALVEEGGAVKEGRFSTQAEAEYQHRRALQRL 1075

Query: 1085 ILLNVPSPIKYLHANLPNKSKLGLYFNPYGKVLDLIDDCIACGVDK-LIEERGGMVWEPQ 1143
            +L  +  P K+L   LP +++L L     G++  LI+D +   +D  ++E    +  +  
Sbjct: 1076 LLQQLAEPAKFLRNKLPGQTELALLHRELGRIDALIEDILLASLDSCVLEGEAELPRDGA 1135

Query: 1144 AFEALKEHVRAELGDTVVEIAKQVETILTTAYNINKRLKGKVDFTMAFALSDVKAQIEGL 1203
               +L E  RA+  +    +AK    IL   + + KR KGK+D + A AL+D+KAQ+  L
Sbjct: 1136 GLLSLAERKRADWTEHAERLAKLTLEILKLWHGLQKRFKGKIDLSQAVALNDIKAQLSKL 1195

Query: 1204 IFSGFATECGWKRLPDILRYMRAIERRMEKLPVDPNKDRLHMLKIESVANKYKELLNKIP 1263
            ++ GF  E     L ++ RY++AIE R+EKLP    KDR+  +++  +  +Y+   +K  
Sbjct: 1196 VYPGFVRETPAVWLKELPRYLKAIEMRLEKLPAQVQKDRVWSIELAGLWAQYQARADKHA 1255

Query: 1264 KGMAIPDNVREIRWMLEELRVSYFAQQLGTPYPVSDKRI 1302
            +       +   RW +EE RVS FAQQLGT  PVSDKR+
Sbjct: 1256 QEGKRDPELALYRWWMEEYRVSLFAQQLGTKMPVSDKRL 1294