Pairwise Alignments

Query, 1309 a.a., ATP-dependent RNA helicase HrpA from Vibrio cholerae E7946 ATCC 55056

Subject, 820 a.a., ATP-dependent helicase from Sinorhizobium meliloti 1021

 Score =  262 bits (670), Expect = 8e-74
 Identities = 164/482 (34%), Positives = 268/482 (55%), Gaps = 18/482 (3%)

Query: 87  LPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQPRRLAAR 146
           LP+ +    +  A+A    V+++   G+GKTT +P    +      G I   +PRRLAAR
Sbjct: 7   LPIREILPGLGDALASAGSVVLSAPPGAGKTTLVPLFLLDQPWRGDGKIILLEPRRLAAR 66

Query: 147 SVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILLAEIQNDRFLNQYDTIII 206
           + A R+AE +  ++G  VGY++R  +++S +T+I+++T+G+    I +D  L+    ++ 
Sbjct: 67  AAAGRMAELLGEKVGETVGYRMRLDNRVSGKTRIEVVTEGVFSRMILDDPELSGVSAVLF 126

Query: 207 DEAHERSLNIDFILGYLKQLLPR-RPDLKVIITSATIDPERFSKHFSNAPIIEVSGRTYP 265
           DE HERSL+ DF L     +    R DL++++ SAT+D ER +    +AP+++  GR++P
Sbjct: 127 DEFHERSLDADFGLALALDVQSALREDLRIVVMSATLDVERIAGLVGDAPVLKSEGRSFP 186

Query: 266 VEVRYRPLAGDDDSESDRDQLEGIFQAVDELCDEGLGDILIFMNGEREIRDTADALSKRN 325
           +++RY   A  +  E      + + + + E      G IL F+ G+ EI  TA  L+ R 
Sbjct: 187 IDIRYENRAAGESVE------DAMVRTIAEAHRSEKGSILAFLPGQAEIARTAARLADRF 240

Query: 326 LRDTEIVPLYARLSAGEQNKIFQP--HAGRRIVLATNVAETSLTVPGIKYVIDPGTARIS 383
              T IVPLY  LS  EQ+   +P     R+IVLAT++AETS+T+ G++ V+D G  R+ 
Sbjct: 241 GEATAIVPLYGNLSQKEQDAAIRPAPKGTRKIVLATSIAETSITIDGVRIVVDSGLQRLP 300

Query: 384 RYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGICIRLYSEEDFLSRPEFTDPEILRTN 443
            +   T + RL    +S+ASA+QR GR GRTE GI IRL+      +   FT P+IL ++
Sbjct: 301 VFEASTGITRLETVRVSRASADQRAGRAGRTEPGIAIRLWHSGQTAALAAFTPPQILASD 360

Query: 444 LASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRLLEELGAINDQIKDPKKRLTESGKQ 503
           L+ ++L +   G+ D     F++ P +  +++   LL ELGAI     D +  LT  G++
Sbjct: 361 LSGLLLDLAHWGVADPSTLRFLDPPPETTLREARGLLLELGAI-----DSRGALTPRGRR 415

Query: 504 LARLPIDPRLARMVLEASKLGCLKEVMIIASALSIQDPRERPSDKQQSADDKHRRFNHED 563
           +  L +  RLA M + A++ G  +E  ++A  L+ Q       D     +++ RRF  E 
Sbjct: 416 IRDLALPVRLAAMAVAAAEEGRAQEACLLAVMLTEQGLGGNGID----IEERLRRFRSER 471

Query: 564 SD 565
           SD
Sbjct: 472 SD 473