Pairwise Alignments

Query, 1309 a.a., ATP-dependent RNA helicase HrpA from Vibrio cholerae E7946 ATCC 55056

Subject, 838 a.a., ATP-dependent helicase HrpB (RefSeq) from Shewanella amazonensis SB2B

 Score =  242 bits (617), Expect = 1e-67
 Identities = 163/445 (36%), Positives = 244/445 (54%), Gaps = 14/445 (3%)

Query: 87  LPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQPRRLAAR 146
           LPV    D++ +++A HQ +I+   TG+GK+T LP    +      G I   +PRR+AAR
Sbjct: 6   LPVCDLFDELKRSLAQHQQLILEAPTGAGKSTALPLALLDWPEIS-GRIIMLEPRRVAAR 64

Query: 147 SVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILLAEIQNDRFLNQYDTIII 206
           SVA  IA++   +LG  VGY+VR   ++S +T+++++T+GIL   IQ+D  L+    II 
Sbjct: 65  SVARFIAKQRGCQLGAEVGYRVRGDSKVSKETRLEVVTEGILTRMIQDDPELDGVGLIIF 124

Query: 207 DEAHERSLNIDFILGY-LKQLLPRRPDLKVIITSATIDPERFSKHFSNAPIIEVSGRTYP 265
           DE HER L+ D  L   L+     R DL ++  SAT+          +A ++   GR++P
Sbjct: 125 DEIHERHLSTDLGLALALEVQAGLRDDLNILAMSATLSGMPLEALMPDAVLLRSEGRSFP 184

Query: 266 VEVRYRPLAGDDDSESDRDQLEGIFQAVDELCDEGL--GDILIFMNGEREIRDTADALSK 323
           V V Y  +    D ++   +             EG+  G +L F+ G+ EI    D L++
Sbjct: 185 VAVEYASVPAGADWQAHMGKTLMELATGKRPLPEGITPGTVLAFLPGKAEIERLKDYLAE 244

Query: 324 RNLRDTE--IVPLYARLSAGEQNKIFQ--PHAGRRIVLATNVAETSLTVPGIKYVIDPGT 379
           R L ++E  I PLY  L A  Q++     P   R++VLATNVAE+SLT+ G+  V+D G 
Sbjct: 245 R-LSESEFAICPLYGELDANTQDRALSADPDGRRKLVLATNVAESSLTIDGVTLVVDCGF 303

Query: 380 ARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGICIRLYSEEDFLSRPEFTDPEI 439
            R + ++ RT V RL ++ ISQASA QR GR GR   G+CIRL+S+++F  + +  +PEI
Sbjct: 304 VRQASFNPRTGVTRLGLKRISQASAIQRAGRAGRLAPGLCIRLWSQDEFERQVKADEPEI 363

Query: 440 LRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRLLEELGAINDQIKDPKKRLTE 499
           LR+ L S+  +    G  D  A   +  P K N      LL++L  ++D  K     LT 
Sbjct: 364 LRSELVSLAQEAAVWGARDFAALKLLSRPPKVNESLAWALLKDLELVDDNHK-----LTA 418

Query: 500 SGKQLARLPIDPRLARMVLEASKLG 524
            G+   RL   PRL  M+L+A  LG
Sbjct: 419 LGRDAHRLGCHPRLGHMLLKARALG 443