Pairwise Alignments

Query, 1309 a.a., ATP-dependent RNA helicase HrpA from Vibrio cholerae E7946 ATCC 55056

Subject, 1289 a.a., ATP-dependent helicase HrpA (RefSeq) from Shewanella amazonensis SB2B

 Score = 1495 bits (3870), Expect = 0.0
 Identities = 750/1288 (58%), Positives = 969/1288 (75%), Gaps = 7/1288 (0%)

Query: 21   SLKKA-LGECLIKDRFRFSKRIDGASKIKNESARNAVFDEIALDIAQSMMVVEQRKQQMP 79
            SL +A L +C   D  R  + +    ++ +E+A+ A F+ +A     +   V+ R    P
Sbjct: 7    SLSRAYLQQCYQSDVARIRRELRDIERLGDETAKAAAFERLAERAEAAKAKVDARLSARP 66

Query: 80   KIEYPALLPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQ 139
            +I YP  LPVSQKRDDIA+AIA HQVVIVAGETGSGKTTQLPKIC ELGRG  GLIGHTQ
Sbjct: 67   RIHYPDNLPVSQKRDDIAEAIAKHQVVIVAGETGSGKTTQLPKICLELGRGSRGLIGHTQ 126

Query: 140  PRRLAARSVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILLAEIQNDRFLN 199
            PRRLAARSVA R+A+E+++ LG  VG+KVRF D I++ + IKLMTDGILLAE+ +D++LN
Sbjct: 127  PRRLAARSVATRVADELQSPLGEAVGFKVRFADAINENSYIKLMTDGILLAELSSDKYLN 186

Query: 200  QYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSKHFSNAPIIEV 259
            QYDT+IIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATID +RFS HF  AP+IEV
Sbjct: 187  QYDTLIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDVDRFSTHFDKAPVIEV 246

Query: 260  SGRTYPVEVRYRPLAGDDDSESDRDQLEGIFQAVDELCDEGLGDILIFMNGEREIRDTAD 319
            SGRTYPVE RYRPL  DD  E D D ++GIF+AVDEL  EG GDILIFMNGEREIRDTA+
Sbjct: 247  SGRTYPVETRYRPLVKDD--EPDLDLMDGIFEAVDELMAEGPGDILIFMNGEREIRDTAE 304

Query: 320  ALSKRNLRDTEIVPLYARLSAGEQNKIFQPHAGRRIVLATNVAETSLTVPGIKYVIDPGT 379
             LS+R  RDTE++PLYARLS GEQ+K+F+ H GRRIVLATNVAETSLTVPGI+YVIDPGT
Sbjct: 305  QLSRRQYRDTEVLPLYARLSYGEQSKVFKSHTGRRIVLATNVAETSLTVPGIRYVIDPGT 364

Query: 380  ARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGICIRLYSEEDFLSRPEFTDPEI 439
            ARISRYSYRTKVQRLPIEPISQASANQR+GRCGR   GICIRLY E DFLSRPEFTDPEI
Sbjct: 365  ARISRYSYRTKVQRLPIEPISQASANQRQGRCGRVGPGICIRLYEETDFLSRPEFTDPEI 424

Query: 440  LRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRLLEELGAINDQIKDPKKRLTE 499
            LRTNLASVILQM A+GLGDI+ FPF++ PD+R+I+DG  LLEEL AI  ++K    ++T 
Sbjct: 425  LRTNLASVILQMLAIGLGDIKGFPFIQPPDERHIKDGFLLLEELQAI--KLKKGLPQMTP 482

Query: 500  SGKQLARLPIDPRLARMVLEASKLGCLKEVMIIASALSIQDPRERPSDKQQSADDKHRRF 559
             G++LA +P+DPRLARMV+EA+  G L E +++ SALSIQDPRERP +K+Q+AD+ H RF
Sbjct: 483  LGRKLAHVPLDPRLARMVIEAADRGALHEALVVTSALSIQDPRERPLEKKQAADEAHSRF 542

Query: 560  NHEDSDFLTLVNLWHYIGQQQKALTSNQFRRQCKLDYLNYLRVREWQDVYTQLHQSTREM 619
              +DSDF++L+NLW+YI +QQKAL+++QFR+ CK +YL YLRVREWQD+YTQ+ QS  E+
Sbjct: 543  ADKDSDFVSLLNLWNYIKEQQKALSASQFRKLCKQEYLAYLRVREWQDLYTQVRQSVHEL 602

Query: 620  GFKLNDEPGSYHAVHSAILVGLLSHIGMKDQEKNEYHGARNARFNIFPASGLFKKQPKWV 679
              KLN  P  Y ++H A+L GLLSH+G KD   NEY GARN RF +FP S L KK PKW+
Sbjct: 603  KLKLNSVPADYDSLHRALLSGLLSHVGFKDNN-NEYLGARNRRFYVFPGSPLAKKGPKWI 661

Query: 680  MSAELVETSKLWARVVAKIEPDWIEPLAKHLSKRSYSEPHWSKKNAAVMAYEKVMLYGIP 739
            ++AEL ETS+L+AR  AKIEP+W+E LA HL K+ ++EP +     AV+A+E  +LYG+ 
Sbjct: 662  VAAELTETSRLFARGCAKIEPEWLEELAAHLIKKQHNEPQFEANQGAVVAFENQVLYGLT 721

Query: 740  IVPKRLVNYGTIDPVLSREIFIRSALVEGDWETKHAFFKQNRALLAEVEELEHKSRRRDI 799
            +V +R V YG I+ + +REIFIRSAL EG  +T+ AFF  N+ LL EVE LEHKSRRRDI
Sbjct: 722  VVNRRKVQYGPINAIEAREIFIRSALAEGQLKTREAFFLHNQKLLEEVESLEHKSRRRDI 781

Query: 800  LVDDEELFQFYDQRVGTEVVSGRHFDAWWKTASRKTPDLLSFEKEMLFKGDASHITDLDY 859
            LVD++ LF FY++R+   + +     +WWK A RK P+LL+F ++ML+     HI+ LD+
Sbjct: 782  LVDEQVLFDFYNERLPEGIYNAPKLFSWWKEARRKQPELLNFNEDMLYARQTGHISKLDF 841

Query: 860  PNFWHQGNLKLKLSYQFEPGENSDGVTVHIPLPILNQVEPHGFDWQIPGLRHELVVSLIK 919
            P+ WHQGNL   LSY FEPG   DGV+VHIP+ +LNQVE  GFD+ +PGLR E  ++LIK
Sbjct: 842  PDVWHQGNLSFALSYHFEPGAEDDGVSVHIPVALLNQVEDSGFDFLVPGLREEKCIALIK 901

Query: 920  SLPKTLRKNFVPAPNYADAFLARVTPFEMPLLDAMEKELRRMTGVTVLREDWKLDQLPAH 979
            SLPK+LR+NFVPAP+YA A +  ++  ++PLL+++ K+L RMTG  V  ED+ L +LP H
Sbjct: 902  SLPKSLRRNFVPAPDYARAAVQAMS-LDLPLLESLSKQLLRMTGTRVSGEDFVLTELPKH 960

Query: 980  LKITYRAVDHRNRKLNESCDLHELKESLKEKVQETLSQVADDDIEQRDLHTWSFGELPKV 1039
            L + ++  D   + + E  DL  LK SL+  V + + QVA   IEQ  L  WS  +LP  
Sbjct: 961  LLMHFKIEDDHGKLVGEGRDLDALKASLQGVVAKAIRQVAKSGIEQAGLTEWSIDDLPAQ 1020

Query: 1040 YQQKRGGFEVRAYPALVDKKDSVEIKLFETEQEQLSAMRAGQRRLILLNVPSPIKYLHAN 1099
            +Q+K+G +EV+A+PALVD+K+SV +KLF+ E +   A   G RRL+L+N+PSP+K+L   
Sbjct: 1021 FQRKKGNYEVKAFPALVDEKESVAVKLFDDEHQAQKAHAQGVRRLLLINIPSPVKHLQQA 1080

Query: 1100 LPNKSKLGLYFNPYGKVLDLIDDCIACGVDKLIEERGGMVWEPQAFEALKEHVRAELGDT 1159
            LPNK+KL +YFNP+G+V  LI+D I   V ++++E+   V     F+  ++ VRA+L   
Sbjct: 1081 LPNKAKLAMYFNPFGQVQLLIEDIIDAAVAQILDEQRLEVRTKAGFDVARDAVRADLNSV 1140

Query: 1160 VVEIAKQVETILTTAYNINKRLKGKVDFTMAFALSDVKAQIEGLIFSGFATECGWKRLPD 1219
              +I+ +VE ILT    I KRLKGK+   +AFA+SD++ Q++ L++ GF  +CG  RL D
Sbjct: 1141 AEQISLKVEQILTLHNQIKKRLKGKISLDIAFAMSDIQTQLDRLVYKGFVADCGHARLSD 1200

Query: 1220 ILRYMRAIERRMEKLPVDPNKDRLHMLKIESVANKYKELLNKIPKGMAIPDNVREIRWML 1279
            I+R+++AIE R+EKLPVDP +D+L +L I  V    +  L K+PK   +P+++ E RW++
Sbjct: 1201 IIRFLKAIEHRLEKLPVDPVRDKLQLLSIHKVEQALEAQLAKVPKSQPVPEHLLEARWLI 1260

Query: 1280 EELRVSYFAQQLGTPYPVSDKRIINAIE 1307
            EELRVS FAQ LGT  P+S+KR++  I+
Sbjct: 1261 EELRVSLFAQVLGTSVPISEKRVLLHIQ 1288