Pairwise Alignments

Query, 1309 a.a., ATP-dependent RNA helicase HrpA from Vibrio cholerae E7946 ATCC 55056

Subject, 834 a.a., ATP-dependent RNA helicase HrpB from Phaeobacter inhibens DSM 17395

 Score =  232 bits (592), Expect = 9e-65
 Identities = 165/480 (34%), Positives = 256/480 (53%), Gaps = 32/480 (6%)

Query: 87  LPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQPRRLAAR 146
           LP+     ++  A+   +  ++    G+GKTT++P    E G    G I   +PRRLAAR
Sbjct: 4   LPIDDALPELIAALQRQKRAVLQAPPGAGKTTRVPLAMLEAGLCA-GRILMLEPRRLAAR 62

Query: 147 SVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILLAEIQNDRFLNQYDTIII 206
           + A R+A+ +   +G  VGY++R   ++S +T+I+++T+GIL   +Q+D  L     +I 
Sbjct: 63  AAAERMADTLGEPVGQTVGYRIRGEAKVSAETRIEVVTEGILTRILQSDPDLPGVGAVIF 122

Query: 207 DEAHERSLNIDFILGYLKQLLPR-RPDLKVIITSATIDPERFSKHFSNAPIIEVSGRTYP 265
           DE HERSL+ DF L    ++    R DL ++  SAT+D    ++    AP++   GR+YP
Sbjct: 123 DEFHERSLSADFGLALCLEVAGALRDDLILLAMSATLDAAPVAE-LMEAPLVTSEGRSYP 181

Query: 266 VEVRY--RPLAGDDDSESDRDQLEGIFQAVDELCDEGL--------------GDILIFMN 309
           VE R+   PL  D  S     +L+ +   V     E                G IL+F+ 
Sbjct: 182 VETRWLDTPLPADSRSGRGPRRLDALVDLVLRAEAESRPAGSGGRGGSEAKGGGILVFLP 241

Query: 310 GEREIRDTADALSKRNLRDTEIVPLYARLSAGEQNKIFQPH-AGRRIVLATNVAETSLTV 368
           GE EIR  A AL+ R   D  + PL+  L   EQ    QP    R+IVLAT++AETSLT+
Sbjct: 242 GEGEIRKAAAALAGRLPGDCVVRPLFGALPFAEQRAAIQPDPVARKIVLATSIAETSLTI 301

Query: 369 PGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGICIRLYSEEDF 428
             I+ V+D G AR SR+   + + RL  E +++A A QR+GR GR   G+  RL+++ + 
Sbjct: 302 QDIRVVVDMGLARRSRFDPGSGMSRLVTERVTRAEATQRQGRAGRMAAGVGYRLWTKGED 361

Query: 429 LSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRLLEELGAIND 488
            +   F  PEI   +L S+ L++   G G  +  PF+  P +  +++   LL  LGA+  
Sbjct: 362 GALAAFPPPEIQAADLTSLALELALWGAGP-DDLPFLTPPPEGALKEAQALLRMLGAL-- 418

Query: 489 QIKDPKKRLTESGKQLARLPIDPRLARMVLEASKLGCLKEVMIIASALSIQDP-RERPSD 547
              D + R+T  GK LA+LP+ PRL  M+   ++ G   +   +A+ L+ +DP R  P D
Sbjct: 419 ---DGEGRITSHGKVLAKLPLHPRLGHML---ARFGA--DAAPLAALLAERDPLRGAPVD 470