Pairwise Alignments

Query, 1309 a.a., ATP-dependent RNA helicase HrpA from Vibrio cholerae E7946 ATCC 55056

Subject, 843 a.a., ATP-dependent helicase HrpB (RefSeq) from Shewanella loihica PV-4

 Score =  226 bits (575), Expect = 9e-63
 Identities = 151/442 (34%), Positives = 239/442 (54%), Gaps = 17/442 (3%)

Query: 87  LPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQPRRLAAR 146
           +P+     +I + +A +  +I+   TG+GK+T LP    +    + G I   +PRR+AAR
Sbjct: 15  VPIQTLLPEIQRTLADNAQLILQAPTGAGKSTALPLAMLDWPEIE-GKILMLEPRRIAAR 73

Query: 147 SVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILLAEIQNDRFLNQYDTIII 206
           SVA+ IA      +G  VG++VR    +S +T+++++T+G+L   IQ D  L+ Y  II 
Sbjct: 74  SVAHFIAARRGEPVGQSVGFRVRGESSVSAKTRLEVVTEGVLTRMIQQDPELSGYGLIIF 133

Query: 207 DEAHERSLNIDFILGYLKQLLPR-RPDLKVIITSATIDPERFSKHFSNAPIIEVSGRTYP 265
           DE HER L  D  L    ++    R DLK++  SAT+D         +A  +   GR++P
Sbjct: 134 DEIHERHLTTDLGLALALEVQASFREDLKILAMSATLDGLPLQALMPDAASLVSEGRSFP 193

Query: 266 VEVRYRPLAGDDDSESDRDQLEGIFQAVDE-LCDEGLGDILIFMNGEREIRDTADALSKR 324
           V + YRP      S + +D L  + + + E + +   G +L F+ G+REI      LS+R
Sbjct: 194 VSLSYRP------SPAHQDWLLHMAKVIVEAVAEHQEGSLLAFLPGQREIARLQMLLSER 247

Query: 325 -NLRDTEIVPLYARLSAGEQNKIFQPHAG--RRIVLATNVAETSLTVPGIKYVIDPGTAR 381
            + +   I PLY  L   +Q+    P     R++VL+TNVAE+SLT+  I+ V+D G  R
Sbjct: 248 LDPKQFLITPLYGALPPSQQDSAIAPPPPGMRKLVLSTNVAESSLTIQDIRLVVDAGYKR 307

Query: 382 ISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGICIRLYSEEDFLSRPEFTDPEILR 441
            + ++ +T V RL ++ ISQ+SA QR GR GR  EG CIRL+ +++     +  +PEIL 
Sbjct: 308 QASFNPKTAVSRLSLKRISQSSAAQRSGRAGRLSEGHCIRLWPQQEHERLLKADEPEILH 367

Query: 442 TNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRLLEELGAINDQIKDPKKRLTESG 501
            +L + +L     G+  ++A P +  P + N      LL+ L  +     D  +R+T  G
Sbjct: 368 GDLTNAVLDAAFWGVNTLDALPLISPPSEANETVASDLLQALALV-----DSDRRITAHG 422

Query: 502 KQLARLPIDPRLARMVLEASKL 523
           +   RL   PRLA M+L A +L
Sbjct: 423 RAAYRLGCHPRLAHMLLAAKEL 444