Pairwise Alignments

Query, 1309 a.a., ATP-dependent RNA helicase HrpA from Vibrio cholerae E7946 ATCC 55056

Subject, 1320 a.a., ATP-dependent helicase HrpA from Dechlorosoma suillum PS

 Score = 1085 bits (2806), Expect = 0.0
 Identities = 588/1312 (44%), Positives = 837/1312 (63%), Gaps = 37/1312 (2%)

Query: 14   PKANSAASLKKALGECLIKDRFRFSKRIDGASKIKNESARNAVFDEIALDIAQSMMVVEQ 73
            P  +   S   A  +CL +DR R  + +  ++      A  A  D  AL +A+S     +
Sbjct: 13   PIVSLPRSAPPAFADCLTQDRPRL-RALSRSAGQPGPHAEKAKADYEAL-LARSRAACAE 70

Query: 74   RKQQMPKIEYPALLPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPKICAELGRGKYG 133
               ++PK EY   LPV+ +R++I   I H+QVVIV GETGSGKTTQLPKIC ELGRG  G
Sbjct: 71   WAGRLPKPEYAEDLPVNGRREEIKALIEHNQVVIVCGETGSGKTTQLPKICLELGRGAAG 130

Query: 134  LIGHTQPRRLAARSVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILLAEIQ 193
            LIGHTQPRRLAARSVA R+A+E++T++G  VG K+RF D+   Q+ +KLMTDGILLAE Q
Sbjct: 131  LIGHTQPRRLAARSVAARVAQELQTQIGAGVGVKIRFQDRSGPQSYLKLMTDGILLAETQ 190

Query: 194  NDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSKHFSN 253
             D +LN YDTIIIDEAHERSLNIDF+LGYLKQLL +R DLKVIITSATID ERF++HF+ 
Sbjct: 191  TDPYLNAYDTIIIDEAHERSLNIDFLLGYLKQLLAKRKDLKVIITSATIDAERFAQHFAQ 250

Query: 254  ----APIIEVSGRTYPVEVRYRPLAGDDDSESDRDQLEGIFQAVDELCDEGLGDILIFMN 309
                AP+IEVSGR YPVEVRYRP+   ++ + +RD  + I  AV EL  EG GD+L+F+ 
Sbjct: 251  HGKPAPVIEVSGRLYPVEVRYRPVTPLEEDQEERDLYDAIVDAVHELGREGPGDVLVFLP 310

Query: 310  GEREIRDTADALSKRNLR--DTEIVPLYARLSAGEQNKIFQPHAGRRIVLATNVAETSLT 367
            GEREIR+ A+AL K +      EI+PL++RLSA EQ+++F+   GRR+VLATNVAETSLT
Sbjct: 311  GEREIREAAEALRKHHFPGPQPEILPLFSRLSAAEQDRVFKTGGGRRVVLATNVAETSLT 370

Query: 368  VPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGICIRLYSEED 427
            VPGI+YV+D G AR+ RYSYR KV+ L +E +SQA+A QR GRCGR   G+CIRLY E D
Sbjct: 371  VPGIRYVVDTGLARVKRYSYRNKVEMLQVERVSQAAARQRAGRCGRVAAGVCIRLYDEAD 430

Query: 428  FLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRLLEELGAIN 487
            F +R EFTDPEILR++LA VIL+M AL L D+E+FPF+EAP  + I DG  LL+ELG + 
Sbjct: 431  FNARGEFTDPEILRSSLAGVILRMKALKLTDVESFPFIEAPPPKAINDGYSLLQELGGL- 489

Query: 488  DQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKLGCLKEVMIIASALSIQDPRERPSD 547
                D   RLT+ G+ LA+LP+DPR+ARM++ A   GCLKEV++IA+ALS+QDPRERP +
Sbjct: 490  ----DEDNRLTDVGRGLAKLPLDPRIARMIVAARDRGCLKEVLVIAAALSVQDPRERPQE 545

Query: 548  KQQSADDKHRRFNHEDSDFLTLVNLWHYIGQQQKALTSNQFRRQCKLDYLNYLRVREWQD 607
            + Q+AD+KHR+F  E S+FL+ + LW++  +Q + L+  +    CK  +L+YLR+REW++
Sbjct: 546  RLQAADEKHRQFADEKSEFLSWLKLWNWFEEQARHLSGRKLAEACKERFLSYLRMREWRE 605

Query: 608  VYTQLHQSTREMGFKLNDEPGSYHAVHSAILVGLLSHIGMKDQEKNEYHGARNARFNIFP 667
            VY Q+H    E+G++ N+ P +Y  +H A+L GLL +IG K  + + Y GAR  RF I P
Sbjct: 606  VYNQIHAMVTELGWRENEIPATYEPIHKALLTGLLGNIGCKSDDSSHYLGARGIRFLIHP 665

Query: 668  ASGLFKKQPKWVMSAELVETSKLWARVVAKIEPDWIEPLAKHLSKRSYSEPHWSKKNAAV 727
             S L KK  KWV+ AEL ET+KL+AR +A+IEP+W+E +  HL ++SY +PHW KK    
Sbjct: 666  GSPLQKKAGKWVVCAELTETTKLYARCLARIEPEWLEEVGAHLIRKSYFDPHWEKKAMQA 725

Query: 728  MAYEKVMLYGIPIVPKRLVNYGTIDPVLSREIFIRSALVEG----DWETKHAFFKQNRAL 783
            +AYE+  L+GI + PK+ VN+G ++P  +R +FIR  LV G    D+  +  F++ N+  
Sbjct: 726  VAYERSTLHGIVVNPKKRVNFGPMNPEEARLLFIRQGLVGGEINEDFVRRWPFYQHNQKA 785

Query: 784  LAEVEELEHKSRRRDILVDDEELFQFYDQRVGTEVVSGRHFDAWWKTASRKTPDLLSFEK 843
            + ++E LEHK RR+D+LVDDE +F FYD  + + + +G  FD W K A R+   LL  +K
Sbjct: 786  IRDIENLEHKQRRQDVLVDDELIFAFYDHLIPSGIYNGADFDKWRKEAERENQKLLFLQK 845

Query: 844  EMLFKGDASHITDLDYPNFWHQGNLKLKLSYQFEPGENSDGVTVHIPLPILNQVEPHGFD 903
            E L + +A+ +T   +P       +   L+Y FEPG   DGVT+ +PL  LNQV  +  +
Sbjct: 846  EDLMRHEAAGVTTDAFPPQMRLSGVDYALTYHFEPGSPRDGVTLVLPLAQLNQVPANRSE 905

Query: 904  WQIPGLRHELVVSLIKSLPKTLRKNFVPAPNYADAFLA-------RVTP-FEMPLLD-AM 954
            W +PGL  E VV L+K+LP+ +R   VP P +A+ F+A       R+ P    PL+D   
Sbjct: 906  WLVPGLLKEKVVQLVKTLPQRIRAKLVPVPEFAEEFIAWVGNDEKRMAPGIIAPLIDFIF 965

Query: 955  EKELRRMTGVTVLREDWKLDQLPAHLKITYRAVDHRNRKLNESCDLHELKESLKEKVQET 1014
            E       G  V  + ++  +LPAH  + ++ VD   R+L+ S  L +L+     + ++ 
Sbjct: 966  ESRGLNARGWAVTPDAFRPGELPAHFSMNFKLVDEHGRQLDMSRSLAQLRGEWGREARQE 1025

Query: 1015 LSQVADDDIEQRDLHTWSFGELPKVYQQKRGGFEVRAYPALVDKKDSVEIKLFETEQEQL 1074
              ++ +   E   L  W+FG+LP++ +   GG  V  YP L +  ++V ++++++++E L
Sbjct: 1026 FQELHETPSEFTGLTDWTFGKLPELMEVAVGGQMVIGYPGLTEDGETVSLRVYDSQEEAL 1085

Query: 1075 SAMRAGQRRLILLNVPSPIKYLHANLPNKSKLGLYFNPYGKVLDLIDDCIACGVDKLIEE 1134
            +A R G  RL  L +   +KY   NLP  +++ + F   G   DL    ++     +I E
Sbjct: 1086 AAHRLGLSRLFQLQLKEQVKYFEKNLPGLTQMAMQFMSLGSSDDLRQQLVS-----VIFE 1140

Query: 1135 RGGMV--W--EPQAFEALKEHVRAELGDTVVEIAKQVETILTTAYNINKRLKGKVDFTMA 1190
            R  +V  W  + ++F+A     +  LG    EI + V  +LT    + K+L     F   
Sbjct: 1141 RACLVEPWPEDAESFKARCAEGKNRLGLLAQEICRLVGLVLTEWQALVKKLPAFKPF--P 1198

Query: 1191 FALSDVKAQIEGLIFSGFATECGWKRLPDILRYMRAIERRMEKLPVDPNKDRLHMLKIES 1250
             A+ D++ QI  LI   F  E  ++RL    RY++A   R++KL  +P +D   +    +
Sbjct: 1199 GAVQDIEKQIGRLIHKRFVLETPFERLQHFPRYLKAAAMRLDKLKANPARDVQLLADYST 1258

Query: 1251 VANKYKELLNKIPKGMAIPDNVREIRWMLEELRVSYFAQQLGTPYPVSDKRI 1302
            +  +Y+    ++ K       + + RW+LEELRV+ FAQ+L TP PVS KR+
Sbjct: 1259 LWTQYERRALQLAKQGVSDPQLEQFRWLLEELRVNLFAQELKTPVPVSVKRL 1310