Pairwise Alignments

Query, 1309 a.a., ATP-dependent RNA helicase HrpA from Vibrio cholerae E7946 ATCC 55056

Subject, 917 a.a., ATP-dependent helicase HrpB (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  236 bits (601), Expect = 9e-66
 Identities = 157/475 (33%), Positives = 253/475 (53%), Gaps = 24/475 (5%)

Query: 78  MPKIEYPALLPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPK--ICAELGRGKYGLI 135
           MP++   A+LP       +   +      ++    G+GKTT++P   + A    G+  ++
Sbjct: 1   MPRLPVDAILP------RLLGVLVDGARAVLQAPPGAGKTTRVPLALLAAPWLAGRKVVL 54

Query: 136 GHTQPRRLAARSVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILLAEIQND 195
              +PRRLAAR+ A R+A  +   +G  VGY++R   ++  +T+++++T+G+L   +Q D
Sbjct: 55  --LEPRRLAARAAARRMAATLGEAVGDTVGYRMRLDTRVGPRTRVEVVTEGVLTRMLQAD 112

Query: 196 RFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPR-RPDLKVIITSATIDPERFSKHFSNA 254
             L     +I DE HERSL+ D  L          RPDL++++ SAT+D           
Sbjct: 113 PELADVGCVIFDEFHERSLHADLGLALCLDCQEGLRPDLRLVVMSATLDCGPVVALLGGC 172

Query: 255 PIIEVSGRTYPVEVRYRPLAGD---DDSESDRDQLEGIFQAVDELCDEGLGDILIFMNGE 311
           P+IE +GR +PV+ R+ P   +    ++       + +  AV     E  G +L+F+ G 
Sbjct: 173 PVIESAGRAFPVDTRHLPPVRNWLPYETTPPGVLEDAVADAVRRALHETPGSLLVFLPGA 232

Query: 312 REIRDTADALSKRNLRD---TEIVPLYARLSAGEQNKIFQPH--AGRRIVLATNVAETSL 366
            EIR TA+ L+  +        +  LY  L+   Q+    P     R++VLAT +AETSL
Sbjct: 233 GEIRRTAERLAGLSATPHGPVAVHALYGDLAPELQDAAIAPAPPGTRKVVLATAIAETSL 292

Query: 367 TVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGICIRLYSEE 426
           T+ G++ VID G AR+ R+  R+ + RL  E +S A A+QR+GR GRTE G C RL+ E 
Sbjct: 293 TIDGVRVVIDAGLARVPRFDPRSGMSRLVTERVSLAGADQRRGRAGRTEPGTCWRLWREG 352

Query: 427 DFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRLLEELGAI 486
           +  +   F  PEIL  +LA ++L++   G+ D  A  +++ P + N+     LL  LGA+
Sbjct: 353 EEAALRPFARPEILDADLAPLLLELALWGVPDASALRWLDEPPQANLAQARELLILLGAL 412

Query: 487 NDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKLGCLKEVMIIASALSIQDP 541
                D   R+T  G+++A LP+ PRLA MV+ A +LG       +A+ L  +DP
Sbjct: 413 -----DGAGRITPHGRRVAVLPLHPRLAHMVVRAEELGLGATACCVAALLEERDP 462