Pairwise Alignments

Query, 1309 a.a., ATP-dependent RNA helicase HrpA from Vibrio cholerae E7946 ATCC 55056

Subject, 826 a.a., RNA helicase, ATP-dependent DEAH box, HrpB type from Marinobacter adhaerens HP15

 Score =  252 bits (644), Expect = 9e-71
 Identities = 159/459 (34%), Positives = 248/459 (54%), Gaps = 16/459 (3%)

Query: 86  LLPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQPRRLAA 145
           +LP+     D+  A+     V++    G+GKTT++P    +      G I   +PRRLAA
Sbjct: 1   MLPIDAILPDLKAALERTTTVLLQAPPGAGKTTRVPAALLDAPWRGDGKILMLEPRRLAA 60

Query: 146 RSVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILLAEIQNDRFLNQYDTII 205
           RS A  +A ++  + G  VGY+ R   ++S  T+I+++T+GIL   IQ D  L +Y  +I
Sbjct: 61  RSAARFMARQLNEQPGQTVGYRTRLDTRVSAATRIEVVTEGILTRLIQADPMLEEYAAVI 120

Query: 206 IDEAHERSLNIDFILGYLKQLLPR-RPDLKVIITSATIDPERFSKHFSNAPIIEVSGRTY 264
            DE HERSL  D  L  +++     R DL++++ SAT+D    ++   + P+I   GR +
Sbjct: 121 FDEFHERSLQADLGLALVRESQQALREDLRLLVMSATLDTGPIAQVLGDVPVITSEGRAF 180

Query: 265 PVEVRYRPLAGDDDSESDRDQLEGIFQAVDELCDEGLGDILIFMNGEREIRDTADALSKR 324
           PV+V YRPL       S R  ++ +   V E   E  G +L+F+ G  EIR     L + 
Sbjct: 181 PVDVHYRPLP-----RSGR-MVDQVTAVVREALAEQSGSLLVFLPGVGEIRRVEQQL-RA 233

Query: 325 NLRD-TEIVPLYARLSAGEQNKIFQP--HAGRRIVLATNVAETSLTVPGIKYVIDPGTAR 381
           NL D   + PLY  L + +Q++   P     R++VLAT +AETSLT+ G++ VID G  R
Sbjct: 234 NLPDRVMLAPLYGNLKSEQQDQAISPAPEGQRKVVLATAIAETSLTIEGVRVVIDCGQQR 293

Query: 382 ISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGICIRLYSEEDFLSRPEFTDPEILR 441
            + +   + + RL    +S+ASA QRKGR GR E G+C RL+SE +     ++T PEIL 
Sbjct: 294 RAVFDPNSGMTRLVTGRVSRASAEQRKGRAGRMEPGVCYRLWSESEQFGLADYTPPEILE 353

Query: 442 TNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRLLEELGAINDQIKDPKKRLTESG 501
            +LA ++L++   G  + +A  +++ P   + +  V LL+ L      + D    +T+ G
Sbjct: 354 ADLAPLVLELAQWGAREADAVAWIDKPPAAHWRQAVALLQWL-----DLLDSDGAITDHG 408

Query: 502 KQLARLPIDPRLARMVLEASKLGCLKEVMIIASALSIQD 540
           K    L I PRLA MVL+   +G       +A+ L  +D
Sbjct: 409 KAARELGIHPRLAHMVLKGRSIGLGGAAAAVAALLEERD 447