Pairwise Alignments

Query, 1309 a.a., ATP-dependent RNA helicase HrpA from Vibrio cholerae E7946 ATCC 55056

Subject, 1293 a.a., ATP-dependent helicase HrpA (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 1508 bits (3903), Expect = 0.0
 Identities = 757/1281 (59%), Positives = 965/1281 (75%), Gaps = 5/1281 (0%)

Query: 26   LGECLIKDRFRFSKRIDGASKIKNESARNAVFDEIALDIAQSMMVVEQRKQQMPKIEYPA 85
            L +C   D  R  +R+    K  +   +     ++A     +   VEQR +  P+I YP 
Sbjct: 15   LQQCFQSDASRIRRRLFKLHKEADSDKKTQELAKLAEQAQAAFEKVEQRLKARPRINYPD 74

Query: 86   LLPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQPRRLAA 145
             LPVS  R+DIA+AI+ +QVVI+AGETGSGKTTQLPKIC ELG G  G IGHTQPRRLAA
Sbjct: 75   NLPVSGMREDIAKAISANQVVIIAGETGSGKTTQLPKICLELGLGSRGFIGHTQPRRLAA 134

Query: 146  RSVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILLAEIQNDRFLNQYDTII 205
            RSVA+R+AEE+++ LG  VG+KVRF D +  ++ IKLMTDGILLAE+ +DR+L+QYDTII
Sbjct: 135  RSVASRVAEELQSPLGEVVGFKVRFADALKSESYIKLMTDGILLAELTSDRYLDQYDTII 194

Query: 206  IDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSKHFSNAPIIEVSGRTYP 265
            IDEAHERSLNIDFILGYLKQ+L +RPDLK+IITSATID ERFSKHF+NAPIIEVSGRTYP
Sbjct: 195  IDEAHERSLNIDFILGYLKQILKKRPDLKIIITSATIDVERFSKHFNNAPIIEVSGRTYP 254

Query: 266  VEVRYRPLAGDDDSESDRDQLEGIFQAVDELCDEGLGDILIFMNGEREIRDTADALSKRN 325
            VE RYRPL    D+E+D DQ+EGIF AVDEL  EGLGDILIFMNGEREIRDTA+ L++RN
Sbjct: 255  VETRYRPLV--QDTEADLDQIEGIFAAVDELVAEGLGDILIFMNGEREIRDTAEQLNRRN 312

Query: 326  LRDTEIVPLYARLSAGEQNKIFQPHAGRRIVLATNVAETSLTVPGIKYVIDPGTARISRY 385
             RDTEI+PLYARLS GEQ+K+F  H GRRIVLATNVAETSLTVPGI+YVIDPGTARISRY
Sbjct: 313  YRDTEILPLYARLSYGEQSKVFSSHTGRRIVLATNVAETSLTVPGIRYVIDPGTARISRY 372

Query: 386  SYRTKVQRLPIEPISQASANQRKGRCGRTEEGICIRLYSEEDFLSRPEFTDPEILRTNLA 445
            SYRTKVQRLPIEPISQASANQR+GRCGR   GICIRLY E DF +RP FTDPEILRTNLA
Sbjct: 373  SYRTKVQRLPIEPISQASANQRQGRCGRVGPGICIRLYDEADFNNRPAFTDPEILRTNLA 432

Query: 446  SVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRLLEELGAINDQIKDPKKRLTESGKQLA 505
            SVILQM A+GLGDI AFPF+E PD R+I+DG  LLEEL A+  Q  +    LT  G+QL+
Sbjct: 433  SVILQMLAIGLGDIAAFPFIEPPDPRHIRDGFLLLEELQAVKQQKGNIV--LTPLGRQLS 490

Query: 506  RLPIDPRLARMVLEASKLGCLKEVMIIASALSIQDPRERPSDKQQSADDKHRRFNHEDSD 565
            ++P+DPRLARMV+E+ +LGCL EV++IAS LSIQDPRERP DK+Q++D+ HRRF    SD
Sbjct: 491  QIPVDPRLARMVIESHQLGCLNEVLVIASGLSIQDPRERPMDKKQASDEAHRRFADPQSD 550

Query: 566  FLTLVNLWHYIGQQQKALTSNQFRRQCKLDYLNYLRVREWQDVYTQLHQSTREMGFKLND 625
            F++ VNLW ++ +QQK L+++QFR++C+ +YL YLRVREWQD+YTQL Q+  ++ ++LND
Sbjct: 551  FVSWVNLWQHLKEQQKELSASQFRKKCRDEYLAYLRVREWQDLYTQLKQAVHDLKWRLND 610

Query: 626  EPGSYHAVHSAILVGLLSHIGMKDQEKNEYHGARNARFNIFPASGLFKKQPKWVMSAELV 685
             P +Y A+H A+L GLLSHIG KD   NEY GARN +F +FP S L KK PKW+M+AEL+
Sbjct: 611  TPANYDALHRALLSGLLSHIGFKDNN-NEYLGARNRKFFVFPGSPLAKKGPKWIMAAELM 669

Query: 686  ETSKLWARVVAKIEPDWIEPLAKHLSKRSYSEPHWSKKNAAVMAYEKVMLYGIPIVPKRL 745
            ETSKL+AR  AKIEP+W+EPLA HL K+++ EPH+  K  +V+A+E  +LYG+ +V +R 
Sbjct: 670  ETSKLFARCCAKIEPEWLEPLAAHLIKKNHLEPHFEAKQGSVIAFENQVLYGLTVVHRRR 729

Query: 746  VNYGTIDPVLSREIFIRSALVEGDWETKHAFFKQNRALLAEVEELEHKSRRRDILVDDEE 805
            V YG I+PV +REIFIRSAL EG  +TK AFF  N+ LL +VE LEHKSRRRDILVD++ 
Sbjct: 730  VQYGPINPVEAREIFIRSALAEGQLQTKEAFFIANQKLLEDVEALEHKSRRRDILVDEQV 789

Query: 806  LFQFYDQRVGTEVVSGRHFDAWWKTASRKTPDLLSFEKEMLFKGDASHITDLDYPNFWHQ 865
            L  FY+ R+   + +   F +WWK A    PDLL F K +L +  A HI+ LD+P+ WH+
Sbjct: 790  LMDFYEPRIPEGIYNAPKFFSWWKEARCTQPDLLDFNKSLLMQRSADHISALDFPDTWHK 849

Query: 866  GNLKLKLSYQFEPGENSDGVTVHIPLPILNQVEPHGFDWQIPGLRHELVVSLIKSLPKTL 925
            GN++L+LSY F+P  + DGV+VHIP+ +LNQ++   FDW + G+R E  V+LIKSLPK L
Sbjct: 850  GNIRLQLSYHFDPAASDDGVSVHIPVALLNQIDDTDFDWLVAGMREEKCVALIKSLPKGL 909

Query: 926  RKNFVPAPNYADAFLARVTPFEMPLLDAMEKELRRMTGVTVLREDWKLDQLPAHLKITYR 985
            R+NFVPAP+YA A +  + PF   LLDAM K+L RM+G  V  ED+ + Q+P HL++ ++
Sbjct: 910  RRNFVPAPDYARACVQAMQPFSASLLDAMCKQLLRMSGTRVNPEDFDVSQMPVHLQMNFK 969

Query: 986  AVDHRNRKLNESCDLHELKESLKEKVQETLSQVADDDIEQRDLHTWSFGELPKVYQQKRG 1045
              D + + + +   L  LK  L+  V + + QVA+  IE+  L  WSFG+LPK ++Q++G
Sbjct: 970  IEDDKGKLVAQGRVLDSLKAELQGVVAKAIRQVANKGIEKEALTEWSFGDLPKQFEQRKG 1029

Query: 1046 GFEVRAYPALVDKKDSVEIKLFETEQEQLSAMRAGQRRLILLNVPSPIKYLHANLPNKSK 1105
             ++VRA+PAL+D KDSV IKLF+ E E  +A R G RRL+LLN+PSP+K+L   LPNK+K
Sbjct: 1030 NYQVRAFPALIDNKDSVAIKLFDDEFEAEAAHRQGLRRLLLLNIPSPVKHLQQALPNKAK 1089

Query: 1106 LGLYFNPYGKVLDLIDDCIACGVDKLIEERGGMVWEPQAFEALKEHVRAELGDTVVEIAK 1165
            L +YFNP+G+V  LIDD IA  V +L++E+   V +   F+A K+ VR EL  T  +IA 
Sbjct: 1090 LAMYFNPFGQVQILIDDIIAAAVQQLLDEKALDVRDAAQFDAAKDWVRQELNPTAEQIAL 1149

Query: 1166 QVETILTTAYNINKRLKGKVDFTMAFALSDVKAQIEGLIFSGFATECGWKRLPDILRYMR 1225
            +VE ILT    I KR KGK+   +AFA+SD+++Q++ L+F GF   CGWKRL D+ RY++
Sbjct: 1150 KVEQILTLYQGIKKRTKGKISLDIAFAMSDIQSQLDQLVFKGFVEACGWKRLADVARYLK 1209

Query: 1226 AIERRMEKLPVDPNKDRLHMLKIESVANKYKELLNKIPKGMAIPDNVREIRWMLEELRVS 1285
            AIE R++KLPVDP +DRLHM  I  V +     L K+P+    P  + E RWM+EE RVS
Sbjct: 1210 AIETRIDKLPVDPTRDRLHMQSITKVQDALAAQLAKVPRSQPTPAALIEARWMIEEYRVS 1269

Query: 1286 YFAQQLGTPYPVSDKRIINAI 1306
             FAQ LGT YP+S+KRI+N I
Sbjct: 1270 CFAQALGTAYPISEKRILNHI 1290