Pairwise Alignments

Query, 1309 a.a., ATP-dependent RNA helicase HrpA from Vibrio cholerae E7946 ATCC 55056

Subject, 835 a.a., ATP-dependent helicase HrpB (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  231 bits (589), Expect = 2e-64
 Identities = 165/461 (35%), Positives = 238/461 (51%), Gaps = 19/461 (4%)

Query: 87  LPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQPRRLAAR 146
           LP+      +  A A H  VI+   TG+GK+T LP    +      G I   +PRR+AAR
Sbjct: 4   LPIHSLLPSLRDAFATHAQVILEAPTGAGKSTALPLAMLDWAEIS-GRILMLEPRRVAAR 62

Query: 147 SVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILLAEIQNDRFLNQYDTIII 206
           SVA  IA   +  +G  VG++VR   ++S  T+++++T+GIL   IQ D  L   D II 
Sbjct: 63  SVAQFIASCRQQAVGQEVGFRVRGEAKVSRDTRLEIVTEGILTRMIQQDPELTGIDMIIF 122

Query: 207 DEAHERSLNIDFILGYLKQLLPR-RPDLKVIITSATIDPERFSKHFSNAPIIEVSGRTYP 265
           DE HER L  D  L    ++    R DLK++  SAT+     S+    A +++  GRT+P
Sbjct: 123 DEIHERHLTTDLGLALALEVQSSLRDDLKILAMSATLSGLALSELMPYAALLKSEGRTFP 182

Query: 266 VEVRYRPLAGDDDSESDRDQLEGIFQAVDELCDEGLGDILIFMNGEREIRDTADALSKR- 324
           VE+ YR +AG         +   +  +   + D G  DIL+F+ G+ EI   A  L++R 
Sbjct: 183 VEIIYRAVAGQQHWLDHLSRT--VLDSAASITDSGPQDILVFLPGKAEILRVAQYLAERL 240

Query: 325 NLRDTEIVPLYARLSAGEQNKIFQPHAG--RRIVLATNVAETSLTVPGIKYVIDPGTARI 382
           +     I PLY  LSA EQ++  +  A   R+IVL+TNVAE+SLT+ GI  VID G  R 
Sbjct: 241 DGSRVAICPLYGELSAQEQDRAIKADASGRRKIVLSTNVAESSLTIEGIGLVIDSGYKRQ 300

Query: 383 SRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGICIRLYSEEDFLSRPEFTDPEILRT 442
           + ++ +T V RL ++ ISQASA QR GR GR   G+CIRL+ +E+     +  +PEI + 
Sbjct: 301 ASFNPKTGVTRLSLKRISQASATQRAGRAGRLAAGVCIRLWGQEEHQRLLKADEPEISQA 360

Query: 443 NLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRLLEELGAINDQIKDPKKRLTESGK 502
           +L S+       G         + AP   N     +LL  L  +     D + +LT  GK
Sbjct: 361 DLVSMAHDCAYWGAKSFSDLLLLTAPPSVNEALAWQLLRRLDVV-----DGQNKLTAHGK 415

Query: 503 QLARLPIDPRLARMVL-------EASKLGCLKEVMIIASAL 536
               L   PRLA M+L       E + L CL   ++ A  L
Sbjct: 416 AAYELGCHPRLAHMLLAAKSHSTELAALACLLAGILEARGL 456