Pairwise Alignments

Query, 1309 a.a., ATP-dependent RNA helicase HrpA from Vibrio cholerae E7946 ATCC 55056

Subject, 1300 a.a., ATP-dependent RNA helicase HrpA from Klebsiella michiganensis M5al

 Score = 1857 bits (4809), Expect = 0.0
 Identities = 900/1288 (69%), Positives = 1076/1288 (83%), Gaps = 1/1288 (0%)

Query: 20   ASLKKALGECLIKDRFRFSKRIDGASKIKNESARNAVFDEIALDIAQSMMVVEQRKQQMP 79
            + L   L   +++D+ RF++R+ G  K+KN  A+ A+  E+A +I Q+   V  R+   P
Sbjct: 10   SQLVTRLDGLMLRDKSRFARRLHGVKKVKNPDAQQAILQEMAQEIEQAAGRVLLREAARP 69

Query: 80   KIEYPALLPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQ 139
             I YP  LPVSQK+ +I  A+  HQVVIVAGETGSGKTTQLPKIC ELGRG  GLIGHTQ
Sbjct: 70   AITYPENLPVSQKKQEILDAVRDHQVVIVAGETGSGKTTQLPKICMELGRGVKGLIGHTQ 129

Query: 140  PRRLAARSVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILLAEIQNDRFLN 199
            PRRLAAR+VANRIAEE++TE GG +GYKVRF+D +SD T +KLMTDGILLAEIQ DR L 
Sbjct: 130  PRRLAARTVANRIAEELQTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLAEIQQDRLLM 189

Query: 200  QYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSKHFSNAPIIEV 259
            QYDTIIIDEAHERSLNIDF+LGYL++LLPRRPDLK+IITSATIDPERFS+HF+NAPIIEV
Sbjct: 190  QYDTIIIDEAHERSLNIDFLLGYLRELLPRRPDLKIIITSATIDPERFSRHFNNAPIIEV 249

Query: 260  SGRTYPVEVRYRPLAGDDDSESDRDQLEGIFQAVDELCDEGLGDILIFMNGEREIRDTAD 319
            SGRTYPVEVRYRP+  D D +++RDQL+ IF AVDEL  E  GDILIFM+GEREIRDTAD
Sbjct: 250  SGRTYPVEVRYRPIVEDAD-DTERDQLQAIFDAVDELGRESPGDILIFMSGEREIRDTAD 308

Query: 320  ALSKRNLRDTEIVPLYARLSAGEQNKIFQPHAGRRIVLATNVAETSLTVPGIKYVIDPGT 379
            AL+K NLR TE++PLYARLS  EQN++FQ H+GRRIVLATNVAETSLTVPGIKYVIDPGT
Sbjct: 309  ALNKLNLRHTEVLPLYARLSNSEQNRVFQAHSGRRIVLATNVAETSLTVPGIKYVIDPGT 368

Query: 380  ARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGICIRLYSEEDFLSRPEFTDPEI 439
            ARISRYS+RTKVQRLPIEP+SQASANQRKGRCGR  EGICIRLYSE+DFLSRP FTDPEI
Sbjct: 369  ARISRYSFRTKVQRLPIEPVSQASANQRKGRCGRVSEGICIRLYSEDDFLSRPAFTDPEI 428

Query: 440  LRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRLLEELGAINDQIKDPKKRLTE 499
            LRTNLASVILQMTALGLGDI AFPFVEAPDKRNIQDGVRLLEELGAI    +    +LT 
Sbjct: 429  LRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQQTAYKLTP 488

Query: 500  SGKQLARLPIDPRLARMVLEASKLGCLKEVMIIASALSIQDPRERPSDKQQSADDKHRRF 559
             G+QL++LP+DPRLARMVLEA K GC++E MII SALSIQDPRERP DKQQ++D+KHRRF
Sbjct: 489  MGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQDPRERPMDKQQASDEKHRRF 548

Query: 560  NHEDSDFLTLVNLWHYIGQQQKALTSNQFRRQCKLDYLNYLRVREWQDVYTQLHQSTREM 619
            + ++SDFL  VNLW+Y+G+QQKAL+SNQFRRQC++D+LNYLRVREWQD+YTQL Q  +E+
Sbjct: 549  HDKESDFLAFVNLWNYLGEQQKALSSNQFRRQCRVDFLNYLRVREWQDIYTQLRQVVKEL 608

Query: 620  GFKLNDEPGSYHAVHSAILVGLLSHIGMKDQEKNEYHGARNARFNIFPASGLFKKQPKWV 679
            G  +  EP  Y  +H+A+L GLLSHIGMKD +K E+ GARNARF+IFP SGLFKK PKW 
Sbjct: 609  GLPVKSEPAEYREIHTALLTGLLSHIGMKDADKQEFTGARNARFSIFPGSGLFKKPPKWT 668

Query: 680  MSAELVETSKLWARVVAKIEPDWIEPLAKHLSKRSYSEPHWSKKNAAVMAYEKVMLYGIP 739
            M AELVETS+LW R+ A+IEP+W+EP+A+HL KRSYSEPHW +   AVMA EKV +YG+P
Sbjct: 669  MVAELVETSRLWGRIAARIEPEWVEPVAQHLIKRSYSEPHWERGQGAVMATEKVTVYGLP 728

Query: 740  IVPKRLVNYGTIDPVLSREIFIRSALVEGDWETKHAFFKQNRALLAEVEELEHKSRRRDI 799
            IV  R VNY  IDP L RE+FIR ALVEGDW+T+HAFF++N  L  E+EELEHKSRRRDI
Sbjct: 729  IVAARKVNYSQIDPALCRELFIRHALVEGDWQTRHAFFRENLKLRNEIEELEHKSRRRDI 788

Query: 800  LVDDEELFQFYDQRVGTEVVSGRHFDAWWKTASRKTPDLLSFEKEMLFKGDASHITDLDY 859
            LVDDE LF+FYDQR+  +V+S RHFD WWK ASR+TPDLL+FEK ML K  A  ++ LDY
Sbjct: 789  LVDDETLFEFYDQRISHDVISARHFDKWWKQASRETPDLLNFEKSMLIKEGAEQVSKLDY 848

Query: 860  PNFWHQGNLKLKLSYQFEPGENSDGVTVHIPLPILNQVEPHGFDWQIPGLRHELVVSLIK 919
            PNFWHQGNLKL+L+YQFEPG ++DGVTVHIPLP+LNQVE  GF+WQIPGLR EL+++LIK
Sbjct: 849  PNFWHQGNLKLRLTYQFEPGADADGVTVHIPLPLLNQVEEAGFEWQIPGLRRELIIALIK 908

Query: 920  SLPKTLRKNFVPAPNYADAFLARVTPFEMPLLDAMEKELRRMTGVTVLREDWKLDQLPAH 979
            SLPK +R+NFVPAPNYA+AFL R TP E+PLLD++E+ELRRMTGVT+ RE W+ +Q+P +
Sbjct: 909  SLPKPVRRNFVPAPNYAEAFLGRATPLELPLLDSLERELRRMTGVTIDREAWQWEQVPDY 968

Query: 980  LKITYRAVDHRNRKLNESCDLHELKESLKEKVQETLSQVADDDIEQRDLHTWSFGELPKV 1039
            LKIT+R VD +N+KL+E   L +LK++LK KVQETLS VADD IE   LH WSFG LP+ 
Sbjct: 969  LKITFRVVDDKNKKLHEGRSLQDLKDALKGKVQETLSAVADDGIELSGLHIWSFGRLPES 1028

Query: 1040 YQQKRGGFEVRAYPALVDKKDSVEIKLFETEQEQLSAMRAGQRRLILLNVPSPIKYLHAN 1099
            Y+QKRG ++V+A+PALVD++DSV IKLF+   EQ   M  G RRL+LLN+PSPIKYLH  
Sbjct: 1029 YEQKRGNYKVKAWPALVDERDSVAIKLFDNPLEQQQEMWRGLRRLLLLNIPSPIKYLHEK 1088

Query: 1100 LPNKSKLGLYFNPYGKVLDLIDDCIACGVDKLIEERGGMVWEPQAFEALKEHVRAELGDT 1159
            LPNK+KLGLYFNPYGKVLDLIDDCI+CGVDKLI+E GG VW  + F AL E VRAEL +T
Sbjct: 1089 LPNKAKLGLYFNPYGKVLDLIDDCISCGVDKLIDEAGGPVWSEEGFAALHEKVRAELNET 1148

Query: 1160 VVEIAKQVETILTTAYNINKRLKGKVDFTMAFALSDVKAQIEGLIFSGFATECGWKRLPD 1219
            VVEIAKQVE ILT  +NINKRLKG+VD TMA  LSD+K+Q+ GL++ GF T  G++RL D
Sbjct: 1149 VVEIAKQVEQILTAVFNINKRLKGRVDMTMALGLSDIKSQMSGLVYRGFVTGNGFRRLGD 1208

Query: 1220 ILRYMRAIERRMEKLPVDPNKDRLHMLKIESVANKYKELLNKIPKGMAIPDNVREIRWML 1279
             LRY++AIE+R+EK+ +DP++DR  MLK+ES+  ++++ LNK+P      D+V+EIRWM+
Sbjct: 1209 TLRYLQAIEKRLEKMAIDPHRDRAQMLKVESLQQRWQQWLNKLPPQRRQDDDVQEIRWMI 1268

Query: 1280 EELRVSYFAQQLGTPYPVSDKRIINAIE 1307
            EELRVS FAQQLGTPYP+SDKR++ A+E
Sbjct: 1269 EELRVSLFAQQLGTPYPISDKRVLQAME 1296