Pairwise Alignments

Query, 1309 a.a., ATP-dependent RNA helicase HrpA from Vibrio cholerae E7946 ATCC 55056

Subject, 809 a.a., ATP-dependent helicase from Klebsiella michiganensis M5al

 Score =  259 bits (663), Expect = 5e-73
 Identities = 173/465 (37%), Positives = 254/465 (54%), Gaps = 19/465 (4%)

Query: 87  LPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPKICAELGRGKY-GLIGHTQPRRLAA 145
           LPV+    ++  A+ H   V++   TG+GK+T LP     L +GK  G I   +PRRLAA
Sbjct: 4   LPVAAVLPELLSALRHAPQVLLNAPTGAGKSTWLP--LQILAQGKINGRIILLEPRRLAA 61

Query: 146 RSVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILLAEIQNDRFLNQYDTII 205
           R+VA R+AE +  + G  VGY++R    +   T+++++T+GIL   IQ D  L+     I
Sbjct: 62  RNVAQRLAELLGEKPGETVGYRMRAETCVGPNTRLEVVTEGILTRMIQRDPELSGVGLAI 121

Query: 206 IDEAHERSLNIDFILGYLKQLLPR-RPDLKVIITSATIDPERFSKHFSNAPIIEVSGRTY 264
           +DE HERSL  D  L  L  +    R DLK++I SAT+D ER  +    AP+I   GR +
Sbjct: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNERLQRLLPEAPVIVSEGRAF 181

Query: 265 PVEVRYRPLAGDDDSESDRDQLEGIFQAVDELCDEGLGDILIFMNGEREIRDTADALSKR 324
           PVE R++PLA     +      E +  A  EL     G +L+F+ G  EI+   + L++R
Sbjct: 182 PVERRFQPLATHQRFD------EAVAIAAAELLRSENGSMLLFLPGVGEIQRVQERLAER 235

Query: 325 NLRDTEIVPLYARLSAGEQNKIFQPH--AGRRIVLATNVAETSLTVPGIKYVIDPGTARI 382
              D  + PLY  L   EQ K   P     R++VLATN+AETSLT+ GI+ V+D    R+
Sbjct: 236 VASDVVLCPLYGALPLSEQRKAILPAPVGMRKVVLATNIAETSLTIEGIRLVVDSAQERV 295

Query: 383 SRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGICIRLYSEEDFLSRPEFTDPEILRT 442
           +R+  RT + RL  + ISQAS  QR GR GR E GIC+ L ++E         DPEIL++
Sbjct: 296 ARFDARTGLTRLVTQRISQASMTQRAGRAGRLEPGICLHLLAKEQAERAAAQGDPEILQS 355

Query: 443 NLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRLLEELGAINDQIKDPKKRLTESGK 502
           +L+S++L++   G  D     +++ P   N+    RLL +L A+  +      RL+  G+
Sbjct: 356 DLSSLLLELLQWGCQDPAQLSWLDLPPAVNLAAARRLLTDLSALEGE------RLSSHGR 409

Query: 503 QLARLPIDPRLARMVLEASKLGCLKEVMIIASALSIQDPRERPSD 547
           ++A L  DPRLA M+  A           +A+ L  + PR   SD
Sbjct: 410 KMAALGNDPRLAAMLTAAEDADGAATAAKLAAILE-EPPRGGNSD 453