Pairwise Alignments

Query, 1309 a.a., ATP-dependent RNA helicase HrpA from Vibrio cholerae E7946 ATCC 55056

Subject, 847 a.a., ATP-dependent helicase HrpB (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  250 bits (638), Expect = 4e-70
 Identities = 161/455 (35%), Positives = 241/455 (52%), Gaps = 12/455 (2%)

Query: 113 GSGKTTQLPKICAELGRGKYGLIGHTQPRRLAARSVANRIAEEMETELGGFVGYKVRFTD 172
           G+GKTT +P    +    +   I   +PRRLAAR+ A  +A  +  ++G  VGY++R   
Sbjct: 40  GAGKTTVVPLHLLDAPWLRSRRIVMLEPRRLAARAAARFMARLLGEQVGETVGYRMRLDS 99

Query: 173 QISDQTQIKLMTDGILLAEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPR-RP 231
           ++  +T+++++T+G+L   + +D  L +Y  +I DE HERSL  D  L     +    R 
Sbjct: 100 RVGPRTRMEVVTEGVLGRMLHDDPTLEEYGLVIFDEYHERSLQADLGLALCLDVADALRD 159

Query: 232 DLKVIITSATIDPERFSKHFSNAPIIEVSGRTYPVEVRYRPLAGDDDSESDRDQLEGIFQ 291
           DL+++  SAT+D           P+IE  GR +PVEVRY P        S  +  + +  
Sbjct: 160 DLRLLAMSATLDAAPLGSLMGGCPVIECEGRQWPVEVRYAPPVNRAGYPSSFE--DNVAA 217

Query: 292 AVDELCDEGLGDILIFMNGEREIRDTADALSKRNLRDTEIVPLYARLSAGEQNKIFQPHA 351
            V     E  GD+L+F+ G  EIR TA  L   +     +  LY  L+   Q+    P  
Sbjct: 218 CVHRALAETEGDVLVFLPGGGEIRRTARRLEGLDAHGVGVHMLYGDLAPALQDAALAPDV 277

Query: 352 G--RRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKG 409
              R++VLAT +AETSLT+ G++ V+D G AR SR+  ++ + RL  E IS A A QR G
Sbjct: 278 SGARKVVLATALAETSLTIEGVRVVVDGGLARFSRFDPQSGMSRLVTERISLAGATQRVG 337

Query: 410 RCGRTEEGICIRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPD 469
           R GRT  G+C RL+ E +  S   F  PE+L  +LA ++LQ++A G+ D     +++AP 
Sbjct: 338 RAGRTGPGVCYRLWHEGETASLRPFARPEVLDADLAPLMLQLSAWGVLDPSKLRWLDAPP 397

Query: 470 KRNIQDGVRLLEELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKLGCLKEV 529
           + N+     LL+ LGAI     D   R+T  GK +  LP+ PRLA MVL A + G     
Sbjct: 398 EVNVNQARILLQSLGAI-----DASGRITGHGKSMNALPLHPRLAHMVLSACRSGSASLA 452

Query: 530 MIIASALSIQDPRER--PSDKQQSADDKHRRFNHE 562
            ++A  L  +   ER    D + S +D  RR  H+
Sbjct: 453 CVLACLLEQRGVAERMPGCDIRPSVEDAVRRMRHK 487