Pairwise Alignments

Query, 1309 a.a., ATP-dependent RNA helicase HrpA from Vibrio cholerae E7946 ATCC 55056

Subject, 823 a.a., ATP-dependent helicase hrpB from Caulobacter crescentus NA1000

 Score =  270 bits (690), Expect = 4e-76
 Identities = 171/493 (34%), Positives = 267/493 (54%), Gaps = 17/493 (3%)

Query: 86  LLPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQPRRLAA 145
           +LP+      +  A+  +   ++    G+GKTT +P    +    +   I   +PRRLAA
Sbjct: 11  MLPIENVLPALKAALLANNATVLVAPPGAGKTTAVPLALLDAPWVEGRKIIVLEPRRLAA 70

Query: 146 RSVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILLAEIQNDRFLNQYDTII 205
           R+ A R+A  +   +G  VG++VR   ++S +T+I+++T+G+    I +D  L+    ++
Sbjct: 71  RAAAARMASNLGESVGDTVGFRVRLQSKVSARTRIEVVTEGVFTRMILDDPGLDGVAAVL 130

Query: 206 IDEAHERSLNIDFILGYLKQLLP-RRPDLKVIITSATIDPERFSKHFSNAPIIEVSGRTY 264
            DE HERSL+ D  L + + +    R DL+++I SAT+D  R S   ++AP++E  GR +
Sbjct: 131 FDEFHERSLDADLGLAFARDVQSVLREDLRLLIMSATLDGARISSLLNDAPVVESQGRMF 190

Query: 265 PVEVRYRPLAGDDDSESDRDQLEG-IFQAVDELCDEGLGDILIFMNGEREIRDTADALSK 323
           PV+ RY           +R +LE  + +AV+    E  G IL+F+ G+ EIR     L++
Sbjct: 191 PVDTRYL-------GRDERQRLEERVGRAVERALAEESGSILVFLPGQGEIRRAESWLNE 243

Query: 324 RNLR-DTEIVPLYARLSAGEQNKIFQPH-AGRR-IVLATNVAETSLTVPGIKYVIDPGTA 380
           R  R D +I PLY  L    Q++   P  AGRR +VLAT++AETSLT+ G++ VID G A
Sbjct: 244 RLRRSDVDIAPLYGALEPAAQDRAISPAPAGRRKVVLATSIAETSLTIEGVRVVIDAGQA 303

Query: 381 RISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGICIRLYSEEDFLSRPEFTDPEIL 440
           R+ R+   + + RL    +S+A+A+QR+GR GRTE G+C RL+ E +  S P F  PEIL
Sbjct: 304 RVPRFDPASGITRLETVRVSRAAADQRRGRAGRTEPGVCYRLWDEPETRSLPAFARPEIL 363

Query: 441 RTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRLLEELGAINDQIKDPKKRLTES 500
             +L+ + L +   G  D     F++ P      +   LL  + A+     D +  LT  
Sbjct: 364 EADLSRLALDLARWGTKDPSDLTFLDPPPAAAFAEARTLLMRVQAL-----DAQGDLTAH 418

Query: 501 GKQLARLPIDPRLARMVLEASKLGCLKEVMIIASALSIQDPRERPSDKQQSADDKHRRFN 560
           GK LA LP+ PRLA MV   +  G  +E   IA+ L+ Q    R  D ++  +  HR  +
Sbjct: 419 GKALADLPLPPRLAHMVARGAASGQAREAAEIAAVLTEQGLGGRDVDLRRRLEGLHRDRS 478

Query: 561 HEDSDFLTLVNLW 573
               D + LV  W
Sbjct: 479 PRGRDAMALVERW 491