Pairwise Alignments

Query, 1309 a.a., ATP-dependent RNA helicase HrpA from Vibrio cholerae E7946 ATCC 55056

Subject, 1378 a.a., DUF3418 domain-containing protein from Bifidobacterium breve UCC2003

 Score =  821 bits (2120), Expect = 0.0
 Identities = 539/1411 (38%), Positives = 749/1411 (53%), Gaps = 219/1411 (15%)

Query: 80   KIEYPALLPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPKICAELGRGKYGL-IGHT 138
            K EYPA LPVS  RD+IA A+   QVVIV+G+TGSGKTTQLPKI  ELG+G +G  I HT
Sbjct: 2    KYEYPAELPVSAARDEIADAVRRSQVVIVSGQTGSGKTTQLPKILLELGQGTHGKQIVHT 61

Query: 139  QPRRLAARSVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILLAEIQNDRFL 198
            QPRR+AAR+VA RIA EM   LG  VGY+VRFTD+ S  T+++++TDGILLA+IQ D  L
Sbjct: 62   QPRRIAARTVAERIASEMGVRLGDEVGYQVRFTDESSPNTRLRVVTDGILLAQIQRDPKL 121

Query: 199  NQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSKHFSNA---- 254
            +QYDTIIIDEAHERSLNIDF+LGYL  LLP+R DLK+IITSATID  +F +HF++A    
Sbjct: 122  SQYDTIIIDEAHERSLNIDFLLGYLTALLPQRRDLKLIITSATIDSVKFQEHFAHALHEK 181

Query: 255  -PIIEVSGRTYPVEVRYRPLA------------------GDDD--------SESDRDQL- 286
             P+IEVSGRT+PV+V Y PL                   GD D        +ESD D   
Sbjct: 182  VPVIEVSGRTFPVQVVYEPLGTAPALMREVPGFATGARPGDADYDELASAIAESDADHSR 241

Query: 287  ---------EGIFQ---AVDELCDE---------GLGDILIFMNGEREIRDTADAL---- 321
                     +GI     AV   C E         G  DIL+F +GER+I +   AL    
Sbjct: 242  RRGNADYADDGITDMPTAVARACAELVIHSSHERGPRDILVFASGERDIHEFEAALRHHY 301

Query: 322  -----SKRNLRDTEIVPLYARLSAGEQNKIFQPHAGRRIVLATNVAETSLTVPGIKYVID 376
                         EI+PL+ARLSA +Q+K+F+ H  +RIV+ATNVAETSLTVPGI+YV+D
Sbjct: 302  GPRADDMHRPDAIEIMPLFARLSAADQHKVFESHTHQRIVIATNVAETSLTVPGIRYVVD 361

Query: 377  PGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGICIRLYSEEDFLSRPEFTD 436
            PGTARISRYS   KVQRLPIEPISQASA+QR GRCGR  +GI IRLYS ED+ +RP FT+
Sbjct: 362  PGTARISRYSKTAKVQRLPIEPISQASADQRSGRCGRVADGIAIRLYSREDYETRPRFTE 421

Query: 437  PEILRTNLASVILQMTALGLG----DIEAFPFVEAPDKRNIQDGVRLLEELGAINDQIKD 492
            PEILRT+L +V+L M ++G+     D+  F F++ PD + + DG   L EL AI    K 
Sbjct: 422  PEILRTSLGAVVLHMLSVGVARTAEDVTNFGFIDPPDMKAVSDGFNELTELKAIGR--KR 479

Query: 493  PKKRLTESGKQLARLPIDPRLARMVLEASKLGC---LKEVMIIASALSIQDPRERPSDKQ 549
             +  LT +G+QLAR+PID RL RMV+EA+K G    L  V+++ + LS+QDPRERP DK+
Sbjct: 480  GEVTLTHTGRQLARIPIDVRLGRMVIEAAKAGSPNLLASVLVVVAFLSLQDPRERPDDKR 539

Query: 550  QSADDKHRRFNHEDSDFLTLVNLWHYIGQQQKALTSNQFRRQCKLDYLNYLRVREWQDVY 609
            + AD  H R+  E SDFLT +N+W  + Q     ++N  RR C+ +Y ++LR+R+W+D+ 
Sbjct: 540  EEADRIHNRYADETSDFLTALNIWDRVFQADGDPSNNALRRICRTEYFSWLRMRQWKDLV 599

Query: 610  TQLHQSTREMGFKLND-----EPG--------------------SYHAVHSAILVGLLSH 644
            +QL Q  +E+ FK+ D      PG                        +H ++L GLLS 
Sbjct: 600  SQLRQMCKELKFKVGDPLPSSRPGLEIRQLPLNQQAAHSLCCSWDTDGIHKSMLAGLLSM 659

Query: 645  IGMK--------------------------DQEKNEYHGARNARFNIFPASGLFKKQPKW 678
            +GM+                             KN+Y GAR  RF +FPAS + KK P W
Sbjct: 660  MGMQVIREPKASDFAGLSGAARARAMKRAQKMSKNDYQGARGTRFALFPASAVAKKTPSW 719

Query: 679  VMSAELVETSKLWARVVAKIEPDWIEPLAKHLSKRSYSEPHWSKKNAAVMAYEKVMLYGI 738
            VMS ELVETS+LWAR  A I+P W EPLA  L++ +Y+EPHWS    + +A  +V+LYG+
Sbjct: 720  VMSTELVETSRLWARYSAAIDPAWAEPLAGQLTRTTYAEPHWSGSRGSAVATARVLLYGL 779

Query: 739  PIVPKRLVNYGTIDPVLSREIFIRSALVEGDWETKHA---FFKQNRALLAEVEELEHKSR 795
            PIV  R V +G I+P+ +R+  IR  LVEGD + + +   F  +NR +L +  +   ++R
Sbjct: 780  PIVQDRAVQWGRINPLEARDFLIRQGLVEGDIQQRFSYDEFVGRNRDILEDAADDASRTR 839

Query: 796  RRDILVDDEELFQFYDQRVGTEVVSGRHFDAWWKTASRKTPDLLSFEKEMLFKGDASHIT 855
            +    V DE+LF FY+  +  +V        WWK    K PDLL F+   + +  +S   
Sbjct: 840  QLADTVSDEDLFDFYNAVIPNDVTCVADLAKWWKIDHDKQPDLLDFDPAKVERLASSDSV 899

Query: 856  DLD-YPNFWHQGN-----LKLKLSYQFEPGENSDGVTVHIPLPILNQVEPHGFDWQ---- 905
             LD YP+ WH        + L+LSY ++P + +DGVTVH+PL  L+++ P  F W     
Sbjct: 900  SLDDYPDHWHTTGSDGQPIDLRLSYVYDPTDLADGVTVHVPLKALSRITPDQFTWNVPGL 959

Query: 906  --------IPGLRHELVVSLI------KSLPKTLRKNFVPAPNYADAFLARVTPFEMP-- 949
                    I  L  +L V  +      +S+   + +++   P         + P +    
Sbjct: 960  LDELILAMIKALPKQLRVQFVPAPDAARSIRDWINEHYPDLPGSGSQQKPNLPPVDEEGT 1019

Query: 950  ------LLDAMEKELRRMTGVTVLRE---DWKLDQLPAHLKITYRAVDH-------RNRK 993
                  L     K      G  +  E      +++L  +L++T+            R R+
Sbjct: 1020 TVGWPDLAHVFTKAAIATVGAQIHPEVLGPELVERLSPYLRVTFSVEQQLPAGKHPRGRR 1079

Query: 994  --------LNESCDLHELKESLKEKVQETLSQVADDDIEQRDLHTWSFGELPKVYQQKRG 1045
                    L  + DL  L+     + + +  Q+     EQ        GE  K+ QQ   
Sbjct: 1080 HARGPVKVLGTAKDLKALQREFAAQAEASARQMVKKQAEQA-------GEQGKLVQQAN- 1131

Query: 1046 GFEVRAYPALVDKKDSVEIKLFETEQEQLSAMRAGQRRLILLNVPSPIKYLHANLPNKSK 1105
                     L+ K  +       TE       R     L L     P + + +       
Sbjct: 1132 ---------LLHKAGAT------TESRATMLWRGALDALRL-----PGERISSRWLGTEA 1171

Query: 1106 LGLYFNPYGKVLDLIDDCIACGVDKLIEERGGMVWEPQAFEALKEHVRAELGDTVVEIAK 1165
            L L   PY     L++D     V +L+     +  +     A+ + +R    DTV ++A 
Sbjct: 1172 LMLAAAPYKSTKALVEDLQLATVKRLLPNVDKLTDDEALANAVLD-IREVYEDTVYQVAH 1230

Query: 1166 QVETILTTAYNINKRLKGKVDFTMAFALSDVKAQIEGLIFSGFATECGWKRLPDILRYMR 1225
             V  I+ +  +++K   GK D  M   L  ++  I  L++ GF        L  + RY++
Sbjct: 1231 DVIGIMKSYADVDKATSGKADLPMLSVLQSIRDHIATLVYPGFIGRTPPDALKSLSRYLK 1290

Query: 1226 AIERRMEKLPVDPNKDRLHMLKIESVANKYKELLNKI----------PKGMAIPDNVREI 1275
            A   R+ K   D N+D    +K    A++ K+L++K           PK  A+     + 
Sbjct: 1291 ADVSRLNKAKTDKNRD----VKWAWQADEAKQLVDKALARAKAEPAGPKHEALTQQAEQA 1346

Query: 1276 RWMLEELRVSYFAQQLGTPYPVSDKRIINAI 1306
            RWMLEE  VS +AQ+LGT  P S  RI  A+
Sbjct: 1347 RWMLEEFYVSLWAQELGTKGPASLNRIKKAL 1377