Pairwise Alignments

Query, 1309 a.a., ATP-dependent RNA helicase HrpA from Vibrio cholerae E7946 ATCC 55056

Subject, 1430 a.a., ATP-dependent helicase from Burkholderia phytofirmans PsJN

 Score =  968 bits (2502), Expect = 0.0
 Identities = 503/981 (51%), Positives = 678/981 (69%), Gaps = 44/981 (4%)

Query: 78   MPKIEYPALLPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPKICAELGRGK----YG 133
            +P I YP  LPVS +R++IA+AIA +QVVIV GETGSGKTTQLPKIC ELGRG      G
Sbjct: 117  IPPITYPEALPVSGRREEIAKAIARNQVVIVCGETGSGKTTQLPKICLELGRGLGAGGSG 176

Query: 134  LIGHTQPRRLAARSVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILLAEIQ 193
            LIGHTQPRR+AA +   RIAEE+ T  G  VGYKVRFTD +S    +KLMTDGILLAE Q
Sbjct: 177  LIGHTQPRRIAASATGRRIAEELGTPFGEVVGYKVRFTDNLSPGASVKLMTDGILLAETQ 236

Query: 194  NDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSKHFSN 253
             D  L  YDT+IIDEAHERSLNIDF+LGYLK++L +RPDLK+I+TSATID +RF++HF +
Sbjct: 237  TDPLLKAYDTLIIDEAHERSLNIDFLLGYLKEILVKRPDLKLIVTSATIDADRFARHFGS 296

Query: 254  ----APIIEVSGRTYPVEVRYRPLAGDDDS---------------------ESDRDQLEG 288
                AP+IEVSGR YPVEVRYRP+A D  +                     E+DRD ++ 
Sbjct: 297  DEKPAPVIEVSGRLYPVEVRYRPVAEDSPAVKAAQGDAPSAPRGDRPKSQRETDRDLMDA 356

Query: 289  IFQAVDELCDEGLGDILIFMNGEREIRDTADALSKRNLRDTEIVPLYARLSAGEQNKIFQ 348
            I  AVDELC EG GD+L+F+ GEREIRD A+AL K +   TEI+PL+ARLSA EQ ++F+
Sbjct: 357  IVDAVDELCREGPGDVLVFLPGEREIRDAAEALRKHHPPHTEILPLFARLSAAEQERVFR 416

Query: 349  PHAGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRK 408
                RRIVLATNVAETSLTVPGI+YV+D G AR+ RYSYR KV++L +E ISQA+ANQR 
Sbjct: 417  TSNARRIVLATNVAETSLTVPGIRYVVDTGLARVKRYSYRNKVEQLQVESISQAAANQRA 476

Query: 409  GRCGRTEEGICIRLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAP 468
            GRCGR  +GICIRLY E D+ SR  FTDPEILR++LASVIL+M +L L  IE FPF+E P
Sbjct: 477  GRCGRVADGICIRLYEESDYQSRARFTDPEILRSSLASVILRMKSLHLTAIETFPFIEPP 536

Query: 469  DKRNIQDGVRLLEELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKLGCLKE 528
              R I DG +LL ELGA++D       +LT  G++LARLP+DPR+ RM+L A     LKE
Sbjct: 537  PGRAIADGYQLLNELGAVDDD-----NQLTPLGRELARLPLDPRVGRMILAARDQQALKE 591

Query: 529  VMIIASALSIQDPRERPSDKQQSADDKHRRFNHEDSDFLTLVNLWHYIGQQQKALTSN-Q 587
            V+IIASALS+QDPR+RP + Q+ AD  HRRF  + S+FL  + +W++  +      SN Q
Sbjct: 592  VLIIASALSVQDPRDRPIEAQEQADQAHRRFADDRSEFLQWLKIWNWFEEAIAHKKSNKQ 651

Query: 588  FRRQCKLDYLNYLRVREWQDVYTQLHQSTREMGFKLNDEPGSYHAVHSAILVGLLSHIGM 647
               +C+ ++L+ LR+REW+DV++QL    RE G++LN+   ++  +H A+L GLL +IG+
Sbjct: 652  LHEECRKNFLSQLRLREWRDVHSQLLTVVREHGWRLNEAEATFEQIHLALLTGLLGNIGL 711

Query: 648  KDQEKNEYHGARNARFNIFPASGLFKKQPKWVMSAELVETSKLWARVVAKIEPDWIEPLA 707
            K  ++  Y GAR  +F ++P S L KK  KWVM+AELVETS+L+AR +AKIEP+WIE + 
Sbjct: 712  KADDEPYYLGARGIKFYLWPGSALVKKAGKWVMAAELVETSRLYARCIAKIEPEWIEKIG 771

Query: 708  KHLSKRSYSEPHWSKKNAAVMAYEKVMLYGIPIVPKRLVNYGTIDPVLSREIFIRSALVE 767
             HL K+S SEPHW K+ A V A+E+ +LYG+PI  +R V++G  DP  +RE+FIR ALVE
Sbjct: 772  AHLLKKSLSEPHWEKRAAQVSAFERAVLYGLPIYHRRRVSFGKQDPARARELFIRGALVE 831

Query: 768  GDWETKHAFFKQNRALLAEVEELEHKSRRRDILVDDEELFQFYDQRVGTEVVSGRHFDAW 827
            G+++TK AFF  NR LLA++E+LEHKSRR+D+LVDDE +F +YDQ +   + +G  F+ W
Sbjct: 832  GEFDTKLAFFAHNRKLLADIEQLEHKSRRQDVLVDDELIFAYYDQALPKGIYTGASFERW 891

Query: 828  WKTASRKTPD------LLSFEKEMLFKGDASHITDLDYPNFWHQGNLKLKLSYQFEPGEN 881
            ++   +K+        LL   ++ L + +A+ +T   +P       +++ L+Y FEPG  
Sbjct: 892  YRDEVKKSGQPEDKLRLLYLSRDDLMRHEAAGVTTDLFPKRMTMAGVEMALTYHFEPGSP 951

Query: 882  SDGVTVHIPLPILNQVEPHGFDWQIPGLRHELVVSLIKSLPKTLRKNFVPAPNYADAFLA 941
             DGVT+ +PL  LNQV+    +W +PG+  E    L+KSLP+ LR++ VP P YA  F+ 
Sbjct: 952  RDGVTLAVPLYALNQVDARRCEWLVPGMLKEKTQLLLKSLPQKLRRHCVPLPEYAAGFVD 1011

Query: 942  RVTPFEM---PLLDAMEKELRRMTGVTVLREDWKLDQLPAHLKITYRAVDHRNRKLNESC 998
            R +        LL+++  ++R  T V + + D+KL+ LP HL + ++ VD   R+L    
Sbjct: 1012 RHSGPRFGAGGLLESLIADVREQTQVAMKQSDFKLETLPPHLFMNFKVVDEHGRQLAMGR 1071

Query: 999  DLHELKESLKEKVQETLSQVA 1019
            ++ +L+  L  + Q+   ++A
Sbjct: 1072 NMSQLRAELGGQAQQHFQKIA 1092



 Score =  158 bits (399), Expect = 4e-42
 Identities = 93/281 (33%), Positives = 153/281 (54%), Gaps = 5/281 (1%)

Query: 1028 LHTWSFGELPKVYQQKRGGFEVRAYPALVDKKDSVEIKLFETEQEQLSAMRAGQRRLILL 1087
            L TW+FG+LP++ + +RGG  +  YPALVD+    ++++F++  E     RAG RRL  L
Sbjct: 1152 LTTWNFGKLPELLEIRRGGQTLFGYPALVDRGTHCDVEVFDSPDEAARIHRAGLRRLFAL 1211

Query: 1088 NVPSPIKYLHANLPNKSKLGLYFNPYGKVLDLIDDCIACGVDKLIEERGGMVWEPQAFEA 1147
             +  PIKYL  NLP   ++ + F P G   +L D  I   +D+   +   +  +  +F  
Sbjct: 1212 QLKEPIKYLEKNLPGLREMAMQFMPRGTQEELRDQLIDTALDRACLQ-DPLPDDDVSFHT 1270

Query: 1148 LKEHVRAELGDTVVEIAKQVETILTTAYNINKRLKGKVDFTMAFALSDVKAQIEGLIFSG 1207
             ++  R+ L     EIA+ V  IL    ++ K+L     FT A+A  D++ Q++GLI   
Sbjct: 1271 RRDEGRSRLTLLAQEIARLVGQILGEYASVAKKLVQAKSFTAAYA--DLQNQLDGLIGKR 1328

Query: 1208 FATECGWKRLPDILRYMRAIERRMEKLPVDPNKDRLHMLKIESVANKYKELLNKIPKGMA 1267
            F  +  + +L    RY++ I  R++KL  DP +D     + + +   Y+  + +  +G  
Sbjct: 1329 FVVDTPYAQLAHFPRYLKGIALRIDKLKADPARDARQFAEFQPLLQNYQRAVAQ--RGGV 1386

Query: 1268 IPDNVREIRWMLEELRVSYFAQQLGTPYPVSDKRIINAIEA 1308
            +   + E RW+LEELR+S FAQ+L TP P+S KR+    E+
Sbjct: 1387 LDPRLSEFRWLLEELRISLFAQELRTPMPISVKRLYKVWES 1427